Rmu_sc0033563.1_g000001

pectinesterase pectinesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033563.1
OG0000522
Physical Location & Seq
Forward (+)
1 .. 1146
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033563.1_g000001.1.cds

Sequence Viewer

Length: 692 bp
ctgtggcggctcaaggatttgtagcagtaaacattacttttcaaaacacggctggaccaagcaaggggcaagcagtggcagttagaaatgatggcgatttgtcggttttctatagctgcagctttgaagcctaccaagacacgttgtacacacattctatgagacaattctacagagaatgtgatatctatggaactgttgacttcattttcggcaatgctgctgttgtgttccaaaactgcaacatataccctcgtcgtcccctccaaggccaatcaaataccatcacagctcaagggcggaccgatgtgaatcagaataccgggatatcaatccagaattgcacagttacagccgcagccgatctggcttcgagtagtttcagtgtcaagaattatctggggaggccatggaaggaatactcgaggacaattttcatgcagggtttcatcgatagttttatagaacctgctggttggcttgcgtggaatggagattttgcaccgagcacattgtattatgctgagtacaataatagaggacctggatcaaatactagcaacagagtcacgtggcctggttaccgtgtgatcggtgcaactgatgctgccaactttacagtctccaacttcatattgggggataattggctgcctcagacagaagtgccttacactggtggcttaatttga

Protein Analysis

229

Amino Acids

25.26

Weight (kDa)

5.08

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02810 AT2G47550 AT4G02330
fragaria_vesca FvH4_2g25960 FvH4_2g25960 FvH4_2g25970 FvH4_5g35570 FvH4_5g35580 FvH4_5g35590
malus_domestica MD03G1290900.v1.1 MD03G1291000.v1.1 MD08G1195600.v1.1 MD11G1307400.v1.1 MD11G1307500.v1.1
prunus_persica Prupe.1G529400_v2.0.a1 Prupe.1G529500_v2.0.a1 Prupe.8G263900_v2.0.a1 Prupe.8G264000_v2.0.a1
pyrus_communis pycom08g16800
rosa_chinensis RchiOBHm_Chr6g0294321 RchiOBHm_Chr6g0294331 RchiOBHm_Chr7g0236951 RchiOBHm_Chr7g0236971 RchiOBHm_Chr7g0237041 RchiOBHm_Chr7g0237051
rosa_laevigata RLG00000001034 RLG00000001035 RLG00000001039 RLG00000001043 RLG00000001045 RLG00000011880 RLG00000011881 RLG00000034181
rosa_multiflora Rmu_co8086188.1_g000001 Rmu_co8458485.1_g000001 Rmu_sc0000272.1_g000007 Rmu_sc0000272.1_g000009 Rmu_sc0002131.1_g000030 Rmu_sc0002131.1_g000037 Rmu_sc0005369.1_g000005 Rmu_sc0005369.1_g000008 Rmu_sc0007991.1_g000005 Rmu_sc0007991.1_g000013 Rmu_sc0033563.1_g000001
rosa_roxburghii Rroxscaffold_3G00224540 Rroxscaffold_3G00224600 Rroxscaffold_3G00224650 Rroxscaffold_3G00224660 Rroxscaffold_7G00173470 Rroxscaffold_7G00173480
rosa_rugosa Rorug06G0243400 Rorug06G0243500 Rorug07G0301200 Rorug07G0301500 Rorug07G0301600
rosa_samantha Rh6AG356000 Rh6AG356100 Rh6BG362600 Rh6BG362800 Rh6CG370000 Rh6CG370100 Rh6DG356500 Rh6DG356600 Rh7AG456200 Rh7AG456500 Rh7AG457500 Rh7AG457600 Rh7BG427500 Rh7BG427700 Rh7BG428400 Rh7BG428500 Rh7CG475100 Rh7CG475300 Rh7CG475700 Rh7CG475800 Rh7DG444100 Rh7DG444300 Rh7DG444700 Rh7DG444900
rosa_wichuraiana Rw6G031020 Rw6G031030 Rw7G037870 Rw7G037880 Rw7G037920 Rw7G037940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 477
AciI CCGC 3 cut(s) 7, 300, 356
AclWI GGATC 1 cut(s) 555
AcvI CACGTG 1 cut(s) 572
AfaI GTAC 2 cut(s) 148, 529
AfiI CCNNNNNNNGG 3 cut(s) 64, 268, 676
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 2 cut(s) 43, 127
AjnI CCWGG 2 cut(s) 543, 576
AluBI AGCT 3 cut(s) 116, 122, 292
AluI AGCT 3 cut(s) 116, 122, 292
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 2 cut(s) 156, 627
AlwI GGATC 1 cut(s) 555
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 3 cut(s) 270, 406, 574
ApeKI GCWGC 6 cut(s) 116, 119, 220, 358, 607, 651
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
AspS9I GGNCC 3 cut(s) 55, 302, 541
AsuC2I CCSGG 1 cut(s) 324
AvaI CYCGRG 1 cut(s) 423
AvaII GGWCC 3 cut(s) 55, 302, 541
BbrPI CACGTG 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 6 cut(s) 103, 131, 207, 370, 594, 638
BccI CCATC 2 cut(s) 85, 292
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 545, 578
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 156, 627
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 3 cut(s) 111, 117, 171
BfuAI ACCTGC 1 cut(s) 477
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 8 cut(s) 8, 117, 120, 221, 356, 359, 608, 652
BlsI GCNGC 8 cut(s) 9, 118, 121, 222, 357, 360, 609, 653
Bme1390I CCNGG 3 cut(s) 324, 545, 578
Bme18I GGWCC 3 cut(s) 55, 302, 541
BmeT110I CYCGRG 1 cut(s) 423
BmgT120I GGNCC 3 cut(s) 55, 302, 541
BmrFI CCNGG 3 cut(s) 324, 545, 578
BmsI GCATC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 324
Bsa29I ATCGAT 1 cut(s) 452
BsaAI YACGTR 1 cut(s) 572
BsaBI GATNNNNATC 2 cut(s) 311, 331
BsaJI CCNNGG 2 cut(s) 267, 409
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 268, 676
Bse1I ACTGG 1 cut(s) 681
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 2 cut(s) 311, 331
BseBI CCWGG 2 cut(s) 545, 578
BseCI ATCGAT 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 267, 409
BseJI GATNNNNATC 2 cut(s) 311, 331
BseLI CCNNNNNNNGG 3 cut(s) 64, 268, 676
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 515, 670
BseNI ACTGG 1 cut(s) 681
BseXI GCAGC 6 cut(s) 103, 131, 207, 370, 594, 638
BshFI GGCC 3 cut(s) 272, 408, 576
BshVI ATCGAT 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 64, 268, 676
BsmAI GTCTC 2 cut(s) 156, 627
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 3 cut(s) 272, 408, 576
BsoBI CYCGRG 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 146
Bsp143I GATC 3 cut(s) 363, 547, 590
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 3 cut(s) 7, 300, 356
BspANI GGCC 3 cut(s) 272, 408, 576
BspCNI CTCAG 2 cut(s) 516, 669
BspDI ATCGAT 1 cut(s) 452
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 222
BsrGI TGTACA 1 cut(s) 146
BsrI ACTGG 1 cut(s) 681
BssECI CCNNGG 2 cut(s) 267, 409
BssMI GATC 3 cut(s) 363, 547, 590
BssT1I CCWWGG 2 cut(s) 267, 409
Bst2UI CCWGG 2 cut(s) 545, 578
Bst4CI ACNGT 4 cut(s) 198, 348, 586, 621
BstAPI GCANNNNNTGC 1 cut(s) 604
BstAUI TGTACA 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 71, 482
BstDEI CTNAG 2 cut(s) 524, 656
BstDSI CCRYGG 1 cut(s) 409
BstEII GGTNACC 1 cut(s) 580
BstKTI GATC 3 cut(s) 366, 550, 593
BstMAI GTCTC 2 cut(s) 156, 627
BstMBI GATC 3 cut(s) 363, 547, 590
BstMWI GCNNNNNNNGC 2 cut(s) 367, 604
BstNI CCWGG 2 cut(s) 545, 578
BstPI GGTNACC 1 cut(s) 580
BstSCI CCNGG 3 cut(s) 322, 543, 576
BstSFI CTRYAG 3 cut(s) 111, 117, 171
BstV1I GCAGC 6 cut(s) 103, 131, 207, 370, 594, 638
Bsu15I ATCGAT 1 cut(s) 452
BsuRI GGCC 3 cut(s) 272, 408, 576
BsuTUI ATCGAT 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 80, 390, 674
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 2 cut(s) 71, 482
Cfr13I GGNCC 3 cut(s) 55, 302, 541
ClaI ATCGAT 1 cut(s) 452
CpoI CGGWCCG 1 cut(s) 302
Csp6I GTAC 2 cut(s) 147, 528
CspI CGGWCCG 1 cut(s) 302
CviAII CATG 2 cut(s) 410, 438
CviQI GTAC 2 cut(s) 147, 528
DdeI CTNAG 2 cut(s) 524, 656
DpnI GATC 3 cut(s) 365, 549, 592
DpnII GATC 3 cut(s) 363, 547, 590
EciI GGCGGA 1 cut(s) 315
Eco130I CCWWGG 2 cut(s) 267, 409
Eco32I GATATC 2 cut(s) 186, 329
Eco47I GGWCC 3 cut(s) 55, 302, 541
Eco72I CACGTG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 423
Eco91I GGTNACC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 541
EcoO65I GGTNACC 1 cut(s) 580
EcoRII CCWGG 2 cut(s) 543, 576
EcoRV GATATC 2 cut(s) 186, 329
EcoT14I CCWWGG 2 cut(s) 267, 409
ErhI CCWWGG 2 cut(s) 267, 409
FaeI CATG 2 cut(s) 413, 441
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 409, 437
Fnu4HI GCNGC 8 cut(s) 8, 117, 120, 221, 356, 359, 608, 652
Fsp4HI GCNGC 8 cut(s) 8, 117, 120, 221, 356, 359, 608, 652
FspBI CTAG 1 cut(s) 557
GluI GCNGC 8 cut(s) 8, 117, 120, 221, 356, 359, 608, 652
HaeIII GGCC 3 cut(s) 272, 408, 576
HapII CCGG 1 cut(s) 323
Hin1II CATG 2 cut(s) 413, 441
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HinfI GANTC 2 cut(s) 312, 566
HpaII CCGG 1 cut(s) 323
Hpy166II GTNNAC 3 cut(s) 30, 149, 201
Hpy188I TCNGA 2 cut(s) 317, 659
Hpy188III TCNNGA 2 cut(s) 336, 390
Hpy8I GTNNAC 3 cut(s) 30, 149, 201
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 408
HpyCH4III ACNGT 4 cut(s) 198, 348, 586, 621
HpyCH4IV ACGT 2 cut(s) 142, 571
HpyCH4V TGCA 6 cut(s) 119, 242, 344, 441, 502, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 604
HpyF3I CTNAG 2 cut(s) 524, 656
HpySE526I ACGT 2 cut(s) 142, 571
Hsp92II CATG 2 cut(s) 413, 441
Kzo9I GATC 3 cut(s) 363, 547, 590
Lsp1109I GCAGC 6 cut(s) 103, 131, 207, 370, 594, 638
LweI GCATC 1 cut(s) 594
MaeI CTAG 1 cut(s) 557
MaeII ACGT 2 cut(s) 142, 571
MaeIII GTNAC 3 cut(s) 348, 567, 580
MalI GATC 3 cut(s) 365, 549, 592
MboI GATC 3 cut(s) 363, 547, 590
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 6 cut(s) 166, 339, 393, 431, 645, 686
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 650
MnlI CCTC 6 cut(s) 263, 274, 398, 419, 532, 665
MseI TTAA 1 cut(s) 685
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 324, 545, 578
MvaI CCWGG 2 cut(s) 545, 578
MwoI GCNNNNNNNGC 2 cut(s) 367, 604
NciI CCSGG 1 cut(s) 324
NcoI CCATGG 1 cut(s) 409
NdeII GATC 3 cut(s) 363, 547, 590
NlaIII CATG 2 cut(s) 413, 441
NmuCI GTSAC 1 cut(s) 567
PaeR7I CTCGAG 1 cut(s) 423
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 8 cut(s) 9, 118, 121, 222, 357, 360, 609, 653
PleI GAGTC 1 cut(s) 574
PmaCI CACGTG 1 cut(s) 572
PmlI CACGTG 1 cut(s) 572
PpsI GAGTC 1 cut(s) 574
Ppu21I YACGTR 1 cut(s) 572
PpuMI RGGWCCY 1 cut(s) 541
Psp5II RGGWCCY 1 cut(s) 541
Psp6I CCWGG 2 cut(s) 543, 576
PspCI CACGTG 1 cut(s) 572
PspEI GGTNACC 1 cut(s) 580
PspGI CCWGG 2 cut(s) 543, 576
PspPI GGNCC 3 cut(s) 55, 302, 541
PspPPI RGGWCCY 1 cut(s) 541
PspXI VCTCGAGB 1 cut(s) 423
PstI CTGCAG 1 cut(s) 121
RsaI GTAC 2 cut(s) 148, 529
RsaNI GTAC 2 cut(s) 147, 528
Rsr2I CGGWCCG 1 cut(s) 302
RsrII CGGWCCG 1 cut(s) 302
SaqAI TTAA 1 cut(s) 685
SatI GCNGC 8 cut(s) 8, 117, 120, 221, 356, 359, 608, 652
Sau3AI GATC 3 cut(s) 363, 547, 590
Sau96I GGNCC 3 cut(s) 55, 302, 541
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 3 cut(s) 324, 545, 578
SduI GDGCHC 1 cut(s) 511
SetI ASST 7 cut(s) 118, 124, 145, 294, 471, 546, 574
SfaNI GCATC 1 cut(s) 594
SfcI CTRYAG 3 cut(s) 111, 117, 171
Sfr274I CTCGAG 1 cut(s) 423
SinI GGWCC 3 cut(s) 55, 302, 541
SlaI CTCGAG 1 cut(s) 423
SmlI CTYRAG 3 cut(s) 11, 293, 423
SmoI CTYRAG 3 cut(s) 11, 293, 423
Sse9I AATT 6 cut(s) 166, 339, 393, 431, 645, 686
SsiI CCGC 3 cut(s) 7, 300, 356
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 3 cut(s) 322, 543, 576
StyI CCWWGG 2 cut(s) 267, 409
TaaI ACNGT 4 cut(s) 198, 348, 586, 621
TaiI ACGT 2 cut(s) 145, 574
TaqI TCGA 3 cut(s) 373, 424, 452
TaqII GACCGA 1 cut(s) 319
TasI AATT 6 cut(s) 166, 339, 393, 431, 645, 686
TatI WGTACW 2 cut(s) 146, 527
TauI GCSGC 2 cut(s) 10, 358
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 1 cut(s) 685
Tru9I TTAA 1 cut(s) 685
TscAI CASTG 3 cut(s) 80, 390, 681
TseFI GTSAC 1 cut(s) 567
TseI GCWGC 6 cut(s) 116, 119, 220, 358, 607, 651
Tsp45I GTSAC 1 cut(s) 567
TspDTI ATGAA 4 cut(s) 195, 426, 438, 621
TspRI CASTG 3 cut(s) 80, 390, 681
VpaK11BI GGWCC 3 cut(s) 55, 302, 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 633
XhoI CTCGAG 1 cut(s) 423
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.