Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8086188.1

Orthogroup ID

OG0000522

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 589

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8086188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

ctgtggtagcaccagggtttatagcagtcaacataactgttcgaaacactgctggaccaagcatggggcaagcagttgcagttcgaaatggagccgacttgtcagttttctacagctgtagctttgagggataccaagacaccttatacccacattctatgagacaattctacagagaatgtgacatatacggaacggttgatttcatattcggaaatgctgcagttgttttccaaaactgcaacatataccctcgccagcccagcaaaggccaatcgaataccatcacagctcagggtcgaacggacccgaatcagaacacagggacttcaatccagaattgcaccattacagccgcggctgatttggcttcaagtaacttcactgtcaagacatatcttgggaggccatggaaggagtattcgaggacggtttacttgcagaatttcatggatagtttgatcgatcctgctggttggct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

160

Amino Acids

17.64

Weight (kDa)

6.72

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02810 AT2G47550 AT4G02330
fragaria_vesca	FvH4_2g25960 FvH4_2g25960 FvH4_2g25970 FvH4_5g35570 FvH4_5g35580 FvH4_5g35590
malus_domestica	MD03G1290900.v1.1 MD03G1291000.v1.1 MD08G1195600.v1.1 MD11G1307400.v1.1 MD11G1307500.v1.1
prunus_persica	Prupe.1G529400_v2.0.a1 Prupe.1G529500_v2.0.a1 Prupe.8G263900_v2.0.a1 Prupe.8G264000_v2.0.a1
pyrus_communis	pycom08g16800
rosa_chinensis	RchiOBHm_Chr6g0294321 RchiOBHm_Chr6g0294331 RchiOBHm_Chr7g0236951 RchiOBHm_Chr7g0236971 RchiOBHm_Chr7g0237041 RchiOBHm_Chr7g0237051
rosa_laevigata	RLG00000001034 RLG00000001035 RLG00000001039 RLG00000001043 RLG00000001045 RLG00000011880 RLG00000011881 RLG00000034181
rosa_multiflora	Rmu_co8086188.1_g000001 Rmu_co8458485.1_g000001 Rmu_sc0000272.1_g000007 Rmu_sc0000272.1_g000009 Rmu_sc0002131.1_g000030 Rmu_sc0002131.1_g000037 Rmu_sc0005369.1_g000005 Rmu_sc0005369.1_g000008 Rmu_sc0007991.1_g000005 Rmu_sc0007991.1_g000013 Rmu_sc0033563.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224540 Rroxscaffold_3G00224600 Rroxscaffold_3G00224650 Rroxscaffold_3G00224660 Rroxscaffold_7G00173470 Rroxscaffold_7G00173480
rosa_rugosa	Rorug06G0243400 Rorug06G0243500 Rorug07G0301200 Rorug07G0301500 Rorug07G0301600
rosa_samantha	Rh6AG356000 Rh6AG356100 Rh6BG362600 Rh6BG362800 Rh6CG370000 Rh6CG370100 Rh6DG356500 Rh6DG356600 Rh7AG456200 Rh7AG456500 Rh7AG457500 Rh7AG457600 Rh7BG427500 Rh7BG427700 Rh7BG428400 Rh7BG428500 Rh7CG475100 Rh7CG475300 Rh7CG475700 Rh7CG475800 Rh7DG444100 Rh7DG444300 Rh7DG444700 Rh7DG444900
rosa_wichuraiana	Rw6G031020 Rw6G031030 Rw7G037870 Rw7G037880 Rw7G037920 Rw7G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	358
AciI	CCGC	2 cut(s)	356, 358
AclWI	GGATC	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	444
AfiI	CCNNNNNNNGG	2 cut(s)	64, 268
AgsI	TTSAA	2 cut(s)	332, 374
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	3 cut(s)	116, 122, 292
AluI	AGCT	3 cut(s)	116, 122, 292
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	460
AoxI	GGCC	2 cut(s)	270, 406
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	55, 306
AsuII	TTCGAA	2 cut(s)	42, 84
AvaII	GGWCC	2 cut(s)	55, 306
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	156
BfmI	CTRYAG	4 cut(s)	111, 117, 171, 221
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	221, 356, 359
BlsI	GCNGC	3 cut(s)	222, 357, 360
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	55, 306
BmgT120I	GGNCC	2 cut(s)	55, 306
BmiI	GGNNCC	2 cut(s)	93, 308
BmrFI	CCNGG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	293
Bpu14I	TTCGAA	2 cut(s)	42, 84
Bsa29I	ATCGAT	1 cut(s)	464
BsaJI	CCNNGG	3 cut(s)	13, 356, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 268
BseBI	CCWGG	1 cut(s)	14
BseCI	ATCGAT	1 cut(s)	464
BseDI	CCNNGG	3 cut(s)	13, 356, 409
BseLI	CCNNNNNNNGG	2 cut(s)	64, 268
BseMII	CTCAG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	272, 408
BshVI	ATCGAT	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	2 cut(s)	64, 268
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	272, 408
Bsp119I	TTCGAA	2 cut(s)	42, 84
Bsp143I	GATC	2 cut(s)	461, 465
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	2 cut(s)	356, 358
BspANI	GGCC	2 cut(s)	272, 408
BspCNI	CTCAG	1 cut(s)	306
BspDI	ATCGAT	1 cut(s)	464
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	93, 308
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	460
BspT104I	TTCGAA	2 cut(s)	42, 84
BssECI	CCNNGG	3 cut(s)	13, 356, 409
BssMI	GATC	2 cut(s)	461, 465
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	4 cut(s)	39, 198, 387, 432
BstBI	TTCGAA	2 cut(s)	42, 84
BstC8I	GCNNGC	2 cut(s)	71, 259
BstDEI	CTNAG	1 cut(s)	293
BstDSI	CCRYGG	2 cut(s)	356, 409
BstFNI	CGCG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	464, 468
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	461, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 367
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	4 cut(s)	111, 117, 171, 221
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	464
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	272, 408
BsuTUI	ATCGAT	1 cut(s)	464
BtgI	CCRYGG	2 cut(s)	356, 409
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 383
Cac8I	GCNNGC	2 cut(s)	71, 259
Cfr13I	GGNCC	2 cut(s)	55, 306
Cfr42I	CCGCGG	1 cut(s)	359
ClaI	ATCGAT	1 cut(s)	464
CviAII	CATG	3 cut(s)	63, 410, 450
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	2 cut(s)	463, 467
DpnII	GATC	2 cut(s)	461, 465
Eco130I	CCWWGG	1 cut(s)	409
Eco47I	GGWCC	2 cut(s)	55, 306
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	3 cut(s)	66, 413, 453
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	3 cut(s)	62, 409, 449
Fnu4HI	GCNGC	3 cut(s)	221, 356, 359
Fsp4HI	GCNGC	3 cut(s)	221, 356, 359
GluI	GCNGC	3 cut(s)	221, 356, 359
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	272, 408
Hin1II	CATG	3 cut(s)	66, 413, 453
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	312
Hpy166II	GTNNAC	2 cut(s)	30, 435
Hpy188I	TCNGA	2 cut(s)	214, 317
Hpy188III	TCNNGA	2 cut(s)	336, 390
Hpy8I	GTNNAC	2 cut(s)	30, 435
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	4 cut(s)	39, 198, 387, 432
HpyCH4V	TGCA	5 cut(s)	79, 223, 242, 344, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 367
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	66, 413, 453
KspI	CCGCGG	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	461, 465
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	26, 38, 271, 276, 280, 308, 349, 458
Lsp1109I	GCAGC	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	181, 376
MalI	GATC	2 cut(s)	463, 467
MboI	GATC	2 cut(s)	461, 465
MluCI	AATT	3 cut(s)	166, 339, 444
MnlI	CCTC	4 cut(s)	120, 263, 398, 419
MspA1I	CMGCKG	2 cut(s)	116, 358
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	263, 367
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	2 cut(s)	461, 465
NlaIII	CATG	3 cut(s)	66, 413, 453
NlaIV	GGNNCC	2 cut(s)	93, 308
NmuCI	GTSAC	1 cut(s)	181
NspV	TTCGAA	2 cut(s)	42, 84
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	222, 357, 360
Psp6I	CCWGG	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	93, 308
PspPI	GGNCC	2 cut(s)	55, 306
PstI	CTGCAG	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	116
SacII	CCGCGG	1 cut(s)	359
SatI	GCNGC	3 cut(s)	221, 356, 359
Sau3AI	GATC	2 cut(s)	461, 465
Sau96I	GGNCC	2 cut(s)	55, 306
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	4 cut(s)	118, 124, 145, 294
SfcI	CTRYAG	4 cut(s)	111, 117, 171, 221
Sfr303I	CCGCGG	1 cut(s)	359
SfuI	TTCGAA	2 cut(s)	42, 84
SgrBI	CCGCGG	1 cut(s)	359
SinI	GGWCC	2 cut(s)	55, 306
Sse9I	AATT	3 cut(s)	166, 339, 444
SsiI	CCGC	2 cut(s)	356, 358
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	4 cut(s)	39, 198, 387, 432
TaqI	TCGA	6 cut(s)	42, 84, 277, 300, 424, 464
TasI	AATT	3 cut(s)	166, 339, 444
TauI	GCSGC	2 cut(s)	358, 361
TfiI	GAWTC	1 cut(s)	312
TscAI	CASTG	2 cut(s)	54, 390
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	195, 438
TspGWI	ACGGA	2 cut(s)	206, 319
TspRI	CASTG	2 cut(s)	54, 390
VpaK11BI	GGWCC	2 cut(s)	55, 306
XapI	RAATTY	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.