Rmu_sc0000272.1_g000009

pectinesterase pectinesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000272.1
OG0000522
Physical Location & Seq
Forward (+)
51371 .. 52680
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000272.1_g000009.1.cds

Sequence Viewer

Length: 1128 bp
atggcttctaagctcttcaatcctcttgtaacctcatcattttcactattcctcatcattttcgctttgtttatatctcaaacttcagctgcagatgttcctctcagcatttctgttccgcccgaaaccatatgcaagtccactccacacccttctgtttgcatttccgtcctccctcacaaaaatgccactgtctatgacttcggccgcttgtcagtccaacactcattcgtccaatcccaaaagcttctggatttgatcaacaaatatgttcaaggtggttccagaccacagctggaaatccaagccctcgaggattgcaagtcgcttgcattgttaaacattgatttcttctcaaacactcttgaaactgtcaacaaaacaagcggtgttcttcctagctccgatgctgatgatgtccaaaccctgcttagtgccatcttaaccaaccagcagacgtgttctgatggccttcaatctgtgagttcagtccaaaatgatctctcagtatccgtttctaatggtacaaatttgtacagtgtctcattagcgttggttacaaagggttgggtcccaaaggatcacaaaaataatggaacaccaaaccagtcgaaaaagcatctcagtttccgaaaggggcgattgtcaatgaaaatgtcaagcgaagcgcgtgcagtttacgactcggttataaatcgaagaaggcaccttcttcaagccggagatgaagaaattttggtgaaggacattgtgaacacagggacttcaatccagaattgcaccattacagccgcggctgatttggcttcaagtaacttcactgtcaagacatatcttgggaggccatggaaggagtattcgaggacggtttacttgcagaatttcatggatagtttgatcgatcctgctggttggctcgcgtggagtggagattttgcactgagcacattgtattatgctgagtacaataatacaggacctggatcaaaaactagcaacagagttacatggcctggttaccatgtgatcagtgcaactgatgctgccaactttacagtctccaacttcatattgggggataattggctgcctcagacaggggtgccttacactggtggcttaatatga

Protein Analysis

375

Amino Acids

40.95

Weight (kDa)

7.04

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02810 AT2G47550 AT4G02330
fragaria_vesca FvH4_2g25960 FvH4_2g25960 FvH4_2g25970 FvH4_5g35570 FvH4_5g35580 FvH4_5g35590
malus_domestica MD03G1290900.v1.1 MD03G1291000.v1.1 MD08G1195600.v1.1 MD11G1307400.v1.1 MD11G1307500.v1.1
prunus_persica Prupe.1G529400_v2.0.a1 Prupe.1G529500_v2.0.a1 Prupe.8G263900_v2.0.a1 Prupe.8G264000_v2.0.a1
pyrus_communis pycom08g16800
rosa_chinensis RchiOBHm_Chr6g0294321 RchiOBHm_Chr6g0294331 RchiOBHm_Chr7g0236951 RchiOBHm_Chr7g0236971 RchiOBHm_Chr7g0237041 RchiOBHm_Chr7g0237051
rosa_laevigata RLG00000001034 RLG00000001035 RLG00000001039 RLG00000001043 RLG00000001045 RLG00000011880 RLG00000011881 RLG00000034181
rosa_multiflora Rmu_co8086188.1_g000001 Rmu_co8458485.1_g000001 Rmu_sc0000272.1_g000007 Rmu_sc0000272.1_g000009 Rmu_sc0002131.1_g000030 Rmu_sc0002131.1_g000037 Rmu_sc0005369.1_g000005 Rmu_sc0005369.1_g000008 Rmu_sc0007991.1_g000005 Rmu_sc0007991.1_g000013 Rmu_sc0033563.1_g000001
rosa_roxburghii Rroxscaffold_3G00224540 Rroxscaffold_3G00224600 Rroxscaffold_3G00224650 Rroxscaffold_3G00224660 Rroxscaffold_7G00173470 Rroxscaffold_7G00173480
rosa_rugosa Rorug06G0243400 Rorug06G0243500 Rorug07G0301200 Rorug07G0301500 Rorug07G0301600
rosa_samantha Rh6AG356000 Rh6AG356100 Rh6BG362600 Rh6BG362800 Rh6CG370000 Rh6CG370100 Rh6DG356500 Rh6DG356600 Rh7AG456200 Rh7AG456500 Rh7AG457500 Rh7AG457600 Rh7BG427500 Rh7BG427700 Rh7BG428400 Rh7BG428500 Rh7CG475100 Rh7CG475300 Rh7CG475700 Rh7CG475800 Rh7DG444100 Rh7DG444300 Rh7DG444700 Rh7DG444900
rosa_wichuraiana Rw6G031020 Rw6G031030 Rw7G037870 Rw7G037880 Rw7G037920 Rw7G037940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 692
AbsI CCTCGAGG 1 cut(s) 311
AccB1I GGYRCC 2 cut(s) 705, 1102
AccII CGCG 3 cut(s) 670, 794, 920
AciI CCGC 5 cut(s) 119, 208, 387, 792, 794
AclWI GGATC 3 cut(s) 588, 896, 991
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 3 cut(s) 529, 732, 880
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 3 cut(s) 526, 536, 965
AfiI CCNNNNNNNGG 2 cut(s) 1097, 1112
AflIII ACRYGT 1 cut(s) 458
AgsI TTSAA 7 cut(s) 19, 275, 368, 476, 716, 768, 810
AjiI CACGTC 1 cut(s) 459
AjnI CCWGG 2 cut(s) 979, 1012
AluBI AGCT 5 cut(s) 13, 89, 247, 295, 402
AluI AGCT 5 cut(s) 13, 89, 247, 295, 402
Alw21I GWGCWC 1 cut(s) 947
Alw26I GTCTC 2 cut(s) 547, 1063
AlwI GGATC 3 cut(s) 588, 896, 991
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 4 cut(s) 205, 469, 842, 1010
ApeKI GCWGC 3 cut(s) 89, 1043, 1087
ApoI RAATTY 3 cut(s) 529, 732, 880
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 2 cut(s) 571, 977
AsuHPI GGTGA 1 cut(s) 751
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 2 cut(s) 571, 977
BanI GGYRCC 2 cut(s) 705, 1102
Bbv12I GWGCWC 1 cut(s) 947
BbvI GCAGC 3 cut(s) 76, 1030, 1074
BccI CCATC 2 cut(s) 446, 461
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 2 cut(s) 981, 1014
BciVI GTATCC 1 cut(s) 520
BclI TGATCA 2 cut(s) 258, 1026
BcoDI GTCTC 2 cut(s) 547, 1063
BfaI CTAG 2 cut(s) 399, 993
BfmI CTRYAG 1 cut(s) 90
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 6 cut(s) 90, 208, 792, 795, 1044, 1088
BlsI GCNGC 6 cut(s) 91, 209, 793, 796, 1045, 1089
Bme1390I CCNGG 2 cut(s) 981, 1014
Bme18I GGWCC 2 cut(s) 571, 977
BmeT110I CYCGRG 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 459
BmgT120I GGNCC 2 cut(s) 571, 977
BmiI GGNNCC 5 cut(s) 283, 572, 573, 707, 1104
BmrFI CCNGG 2 cut(s) 981, 1014
BmsI GCATC 3 cut(s) 397, 628, 1030
Bsa29I ATCGAT 1 cut(s) 900
BsaJI CCNNGG 2 cut(s) 792, 845
Bsc4I CCNNNNNNNGG 2 cut(s) 1097, 1112
Bse1I ACTGG 2 cut(s) 607, 1117
BseBI CCWGG 2 cut(s) 981, 1014
BseCI ATCGAT 1 cut(s) 900
BseDI CCNNGG 2 cut(s) 792, 845
BseLI CCNNNNNNNGG 2 cut(s) 1097, 1112
BseMII CTCAG 6 cut(s) 118, 519, 637, 932, 951, 1106
BseNI ACTGG 2 cut(s) 607, 1117
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 3 cut(s) 76, 1030, 1074
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 3 cut(s) 670, 794, 920
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 4 cut(s) 207, 471, 844, 1012
BshNI GGYRCC 2 cut(s) 705, 1102
BshVI ATCGAT 1 cut(s) 900
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 947
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 2 cut(s) 557, 775
BslI CCNNNNNNNGG 2 cut(s) 1097, 1112
BsmAI GTCTC 2 cut(s) 547, 1063
BsmFI GGGAC 2 cut(s) 557, 775
BsnI GGCC 4 cut(s) 207, 471, 844, 1012
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 947
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 7 cut(s) 258, 499, 580, 897, 901, 983, 1026
Bsp19I CCATGG 1 cut(s) 845
BspACI CCGC 5 cut(s) 119, 208, 387, 792, 794
BspANI GGCC 4 cut(s) 207, 471, 844, 1012
BspCNI CTCAG 6 cut(s) 117, 518, 636, 933, 952, 1105
BspDI ATCGAT 1 cut(s) 900
BspFNI CGCG 3 cut(s) 670, 794, 920
BspLI GGNNCC 5 cut(s) 283, 572, 573, 707, 1104
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 3 cut(s) 588, 896, 991
BspQI GCTCTTC 1 cut(s) 20
BspT107I GGYRCC 2 cut(s) 705, 1102
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 2 cut(s) 607, 1117
BssECI CCNNGG 2 cut(s) 792, 845
BssMI GATC 7 cut(s) 258, 499, 580, 897, 901, 983, 1026
BssT1I CCWWGG 1 cut(s) 845
Bst2UI CCWGG 2 cut(s) 981, 1014
Bst4CI ACNGT 6 cut(s) 193, 373, 539, 823, 868, 1057
Bst6I CTCTTC 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstAUI TGTACA 1 cut(s) 534
BstC8I GCNNGC 3 cut(s) 330, 672, 918
BstDEI CTNAG 8 cut(s) 9, 104, 431, 505, 623, 941, 960, 1092
BstDSI CCRYGG 2 cut(s) 792, 845
BstEII GGTNACC 1 cut(s) 1016
BstENI CCTNNNNNAGG 1 cut(s) 1095
BstFNI CGCG 3 cut(s) 670, 794, 920
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 7 cut(s) 261, 502, 583, 900, 904, 986, 1029
BstMAI GTCTC 2 cut(s) 547, 1063
BstMBI GATC 7 cut(s) 258, 499, 580, 897, 901, 983, 1026
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 803, 1040
BstNI CCWGG 2 cut(s) 981, 1014
BstPI GGTNACC 1 cut(s) 1016
BstSCI CCNGG 2 cut(s) 979, 1012
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 3 cut(s) 670, 794, 920
BstV1I GCAGC 3 cut(s) 76, 1030, 1074
BstZI CGGCCG 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 900
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 4 cut(s) 207, 471, 844, 1012
BsuTUI ATCGAT 1 cut(s) 900
BtgI CCRYGG 2 cut(s) 792, 845
BtrI CACGTC 1 cut(s) 459
BtsIMutI CAGTG 6 cut(s) 189, 544, 819, 938, 1036, 1110
Cac8I GCNNGC 3 cut(s) 330, 672, 918
CaiI CAGNNNCTG 1 cut(s) 980
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 2 cut(s) 571, 977
Cfr42I CCGCGG 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 900
Csp6I GTAC 3 cut(s) 525, 535, 964
CviAII CATG 4 cut(s) 846, 886, 1008, 1022
CviQI GTAC 3 cut(s) 525, 535, 964
DdeI CTNAG 8 cut(s) 9, 104, 431, 505, 623, 941, 960, 1092
DpnI GATC 7 cut(s) 260, 501, 582, 899, 903, 985, 1028
DpnII GATC 7 cut(s) 258, 499, 580, 897, 901, 983, 1026
EaeI YGGCCR 1 cut(s) 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EciI GGCGGA 1 cut(s) 108
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 845
Eco47I GGWCC 2 cut(s) 571, 977
Eco52I CGGCCG 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 311
Eco91I GGTNACC 1 cut(s) 1016
EcoNI CCTNNNNNAGG 1 cut(s) 1095
EcoO109I RGGNCCY 2 cut(s) 571, 977
EcoO65I GGTNACC 1 cut(s) 1016
EcoRII CCWGG 2 cut(s) 979, 1012
EcoT14I CCWWGG 1 cut(s) 845
ErhI CCWWGG 1 cut(s) 845
FaeI CATG 4 cut(s) 849, 889, 1011, 1025
FaqI GGGAC 2 cut(s) 557, 775
FatI CATG 4 cut(s) 845, 885, 1007, 1021
FauNDI CATATG 1 cut(s) 131
FbaI TGATCA 2 cut(s) 258, 1026
Fnu4HI GCNGC 6 cut(s) 90, 208, 792, 795, 1044, 1088
Fsp4HI GCNGC 6 cut(s) 90, 208, 792, 795, 1044, 1088
FspBI CTAG 2 cut(s) 399, 993
GlaI GCGC 1 cut(s) 669
GluI GCNGC 6 cut(s) 90, 208, 792, 795, 1044, 1088
HaeIII GGCC 4 cut(s) 207, 471, 844, 1012
HapII CCGG 1 cut(s) 720
HhaI GCGC 1 cut(s) 670
Hin1II CATG 4 cut(s) 849, 889, 1011, 1025
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 1 cut(s) 683
HpaII CCGG 1 cut(s) 720
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 5 cut(s) 141, 376, 679, 754, 871
Hpy188I TCNGA 4 cut(s) 406, 466, 632, 1095
Hpy188III TCNNGA 5 cut(s) 251, 285, 365, 772, 826
Hpy8I GTNNAC 5 cut(s) 141, 376, 679, 754, 871
HpyAV CCTTC 6 cut(s) 162, 482, 696, 719, 736, 844
HpyCH4III ACNGT 6 cut(s) 193, 373, 539, 823, 868, 1057
HpyCH4IV ACGT 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 1040
HpyF3I CTNAG 8 cut(s) 9, 104, 431, 505, 623, 941, 960, 1092
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 4 cut(s) 849, 889, 1011, 1025
HspAI GCGC 1 cut(s) 668
KflI GGGWCCC 1 cut(s) 571
Ksp22I TGATCA 2 cut(s) 258, 1026
KspI CCGCGG 1 cut(s) 795
Kzo9I GATC 7 cut(s) 258, 499, 580, 897, 901, 983, 1026
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 3 cut(s) 76, 1030, 1074
LweI GCATC 3 cut(s) 397, 628, 1030
MaeI CTAG 2 cut(s) 399, 993
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 5 cut(s) 28, 556, 812, 1003, 1016
MalI GATC 7 cut(s) 260, 501, 582, 899, 903, 985, 1028
MboI GATC 7 cut(s) 258, 499, 580, 897, 901, 983, 1026
MboII GAAGA 6 cut(s) 7, 343, 386, 704, 711, 740
MhlI GDGCHC 1 cut(s) 947
MluCI AATT 5 cut(s) 529, 732, 775, 880, 1081
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 2 cut(s) 244, 1086
MseI TTAA 3 cut(s) 338, 443, 1121
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 3 cut(s) 89, 295, 794
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 2 cut(s) 981, 1014
MvaI CCWGG 2 cut(s) 981, 1014
MvnI CGCG 3 cut(s) 670, 794, 920
MwoI GCNNNNNNNGC 2 cut(s) 803, 1040
NcoI CCATGG 1 cut(s) 845
NdeI CATATG 1 cut(s) 131
NdeII GATC 7 cut(s) 258, 499, 580, 897, 901, 983, 1026
NlaIII CATG 4 cut(s) 849, 889, 1011, 1025
NlaIV GGNNCC 5 cut(s) 283, 572, 573, 707, 1104
PaeR7I CTCGAG 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 20
PkrI GCNGC 6 cut(s) 91, 209, 793, 796, 1045, 1089
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
PpuMI RGGWCCY 2 cut(s) 571, 977
PsiI TTATAA 1 cut(s) 692
Psp5II RGGWCCY 2 cut(s) 571, 977
Psp6I CCWGG 2 cut(s) 979, 1012
PspEI GGTNACC 1 cut(s) 1016
PspGI CCWGG 2 cut(s) 979, 1012
PspN4I GGNNCC 5 cut(s) 283, 572, 573, 707, 1104
PspPI GGNCC 2 cut(s) 571, 977
PspPPI RGGWCCY 2 cut(s) 571, 977
PspXI VCTCGAGB 1 cut(s) 311
PstI CTGCAG 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 980
PvuII CAGCTG 2 cut(s) 89, 295
RsaI GTAC 3 cut(s) 526, 536, 965
RsaNI GTAC 3 cut(s) 525, 535, 964
RseI CAYNNNNRTG 1 cut(s) 183
SacII CCGCGG 1 cut(s) 795
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 338, 443, 1121
SatI GCNGC 6 cut(s) 90, 208, 792, 795, 1044, 1088
Sau3AI GATC 7 cut(s) 258, 499, 580, 897, 901, 983, 1026
Sau96I GGNCC 2 cut(s) 571, 977
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 2 cut(s) 981, 1014
SduI GDGCHC 1 cut(s) 947
SfaNI GCATC 3 cut(s) 397, 628, 1030
SfcI CTRYAG 1 cut(s) 90
Sfr274I CTCGAG 1 cut(s) 311
Sfr303I CCGCGG 1 cut(s) 795
SgrBI CCGCGG 1 cut(s) 795
SinI GGWCC 2 cut(s) 571, 977
SlaI CTCGAG 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 5 cut(s) 529, 732, 775, 880, 1081
SsiI CCGC 5 cut(s) 119, 208, 387, 792, 794
SspMI CTAG 2 cut(s) 399, 993
StyD4I CCNGG 2 cut(s) 979, 1012
StyI CCWWGG 1 cut(s) 845
TaaI ACNGT 6 cut(s) 193, 373, 539, 823, 868, 1057
TaiI ACGT 1 cut(s) 461
TaqI TCGA 5 cut(s) 312, 611, 697, 860, 900
TasI AATT 5 cut(s) 529, 732, 775, 880, 1081
TatI WGTACW 2 cut(s) 534, 963
TauI GCSGC 3 cut(s) 210, 794, 797
Tru1I TTAA 3 cut(s) 338, 443, 1121
Tru9I TTAA 3 cut(s) 338, 443, 1121
TscAI CASTG 6 cut(s) 196, 544, 826, 945, 1036, 1117
TseI GCWGC 3 cut(s) 89, 1043, 1087
TspDTI ATGAA 4 cut(s) 665, 741, 874, 1057
TspGWI ACGGA 2 cut(s) 157, 502
TspRI CASTG 6 cut(s) 196, 544, 826, 945, 1036, 1117
VpaK11BI GGWCC 2 cut(s) 571, 977
XagI CCTNNNNNAGG 1 cut(s) 1095
XapI RAATTY 3 cut(s) 529, 732, 880
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 1069
XhoI CTCGAG 1 cut(s) 311
XspI CTAG 2 cut(s) 399, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.