Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Forward (+)

42324097 .. 42324820

Gene Structure 724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1310000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTGCATCACATTCTCCTTCCTTCCCGTGAAGAAGTTGTCCACCACGATCACGCTGTCGCCTCGCGCAATCAGACGATCAACAAGGTGCGACCCGACGAACCCGGCCCCGCCCGTCACGACGATCCGGAGCCCCTTTCGTTTCAGCCCCAGTGGCACCTTCCCGCTAGAACCCCAGCTATTCAACCCGAATCTGCGTTCGTAGGCCGGCTTGTACTGGGTCGTCGCCGACGAATCGAAGTCGTACCGGACGTACTCGTTCGTGATCGGGACGTTGCCCGAGGCGTAAGGAGAGCGGGAGGTGGAGGACGGGAGGATGGTGAACCCTACGGTGGCGATAACAATGCCGACGAGGATGAAAACGAGCCGCTGCTCTCGGAGCAAGTACTGTATCGGGCGGGTCACGGAGGCCCACGGCTTTGGGCGTTTGGGCGAATAGGTGTCCGCCACATGTTGGTCGGCTTCGTGCCCTCGGAAAATCAGCTCCGAACCCATTTGTCGGAACTGTGTCCGAAGAAGCAGAGTGAGTTTAGAGTCTCTGAGTTGGACGAGTTGGAATCGCCGGCAACTCGCTTTGTGGCGGGTTTTTGTGATGCGGTCTCACTCGTGTATGTTGCGGGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.19

Weight (kDa)

6.06

Isoelectric Point (pI)

65.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AccB7I	CCANNNNNTGG	1 cut(s)	454
AccBSI	CCGCTC	1 cut(s)	296
AccII	CGCG	1 cut(s)	67
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	9 cut(s)	111, 165, 296, 368, 398, 445, 581, 596, 617
AclWI	GGATC	1 cut(s)	119
AfaI	GTAC	4 cut(s)	216, 246, 255, 387
AfiI	CCNNNNNNNGG	3 cut(s)	332, 454, 499
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	2 cut(s)	179, 484
AluI	AGCT	2 cut(s)	179, 484
Alw26I	GTCTC	2 cut(s)	541, 604
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	279
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	3 cut(s)	106, 205, 409
ApeKI	GCWGC	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	107, 410
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	605
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	541, 604
BfaI	CTAG	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	154
BisI	GCNGC	2 cut(s)	368, 371
BlsI	GCNGC	2 cut(s)	369, 372
BmcAI	AGTACT	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	107, 410
BmiI	GGNNCC	3 cut(s)	109, 132, 158
BmrFI	CCNGG	1 cut(s)	105
BmrI	ACTGGG	2 cut(s)	145, 227
BmsI	GCATC	2 cut(s)	16, 583
BmuI	ACTGGG	2 cut(s)	145, 227
BpuMI	CCSGG	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	280, 413, 471
BsaWI	WCCGGW	2 cut(s)	127, 247
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 454, 499
Bse118I	RCCGGY	2 cut(s)	207, 562
Bse1I	ACTGG	2 cut(s)	151, 222
BseAI	TCCGGA	1 cut(s)	127
BseDI	CCNNGG	3 cut(s)	280, 413, 471
BseGI	GGATG	2 cut(s)	322, 361
BseLI	CCNNNNNNNGG	3 cut(s)	332, 454, 499
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	151, 222
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	1 cut(s)	357
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	108, 207, 411
BshNI	GGYRCC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	5 cut(s)	105, 128, 208, 248, 563
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	3 cut(s)	332, 454, 499
BsmAI	GTCTC	2 cut(s)	541, 604
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	3 cut(s)	108, 207, 411
Bso31I	GGTCTC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	135, 471
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	49, 78, 124, 265
BspACI	CCGC	9 cut(s)	111, 165, 296, 368, 398, 445, 581, 596, 617
BspANI	GGCC	3 cut(s)	108, 207, 411
BspCNI	CTCAG	1 cut(s)	532
BspEI	TCCGGA	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	3 cut(s)	109, 132, 158
BspPI	GGATC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	604
BsrBI	CCGCTC	1 cut(s)	296
BsrFI	RCCGGY	2 cut(s)	207, 562
BsrI	ACTGG	2 cut(s)	151, 222
BssAI	RCCGGY	2 cut(s)	207, 562
BssECI	CCNNGG	3 cut(s)	280, 413, 471
BssMI	GATC	4 cut(s)	49, 78, 124, 265
BssSI	CACGAG	1 cut(s)	605
Bst2BI	CACGAG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	332, 390, 507
BstC8I	GCNNGC	2 cut(s)	209, 564
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	322, 361
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	4 cut(s)	52, 81, 127, 268
BstMAI	GTCTC	2 cut(s)	541, 604
BstMBI	GATC	4 cut(s)	49, 78, 124, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 379
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	103
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	108, 207, 411
BtgI	CCRYGG	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	322, 361
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	209, 564
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	2 cut(s)	207, 562
Cfr13I	GGNCC	2 cut(s)	107, 410
Csp6I	GTAC	4 cut(s)	215, 245, 254, 386
CviAII	CATG	1 cut(s)	451
CviQI	GTAC	4 cut(s)	215, 245, 254, 386
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	4 cut(s)	51, 80, 126, 267
DpnII	GATC	4 cut(s)	49, 78, 124, 265
EciI	GGCGGA	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	604
Eco88I	CYCGRG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	454
FaiI	YATR	2 cut(s)	452, 612
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	1 cut(s)	450
FauI	CCCGC	6 cut(s)	118, 172, 289, 391, 574, 610
Fnu4HI	GCNGC	2 cut(s)	368, 371
FokI	GGATG	2 cut(s)	329, 368
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	368, 371
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	2 cut(s)	368, 371
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	108, 207, 411
HapII	CCGG	5 cut(s)	105, 128, 208, 248, 563
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	454
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	4 cut(s)	191, 234, 534, 557
HpaII	CCGG	5 cut(s)	105, 128, 208, 248, 563
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	43, 323
Hpy188I	TCNGA	7 cut(s)	75, 379, 475, 488, 502, 513, 541
Hpy188III	TCNNGA	4 cut(s)	119, 128, 263, 269
Hpy8I	GTNNAC	2 cut(s)	43, 323
Hpy99I	CGWCG	5 cut(s)	101, 125, 228, 234, 353
HpyAV	CCTTC	3 cut(s)	29, 33, 170
HpyCH4III	ACNGT	3 cut(s)	332, 390, 507
HpyCH4IV	ACGT	2 cut(s)	252, 273
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 379
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	2 cut(s)	252, 273
Hsp92II	CATG	1 cut(s)	454
HspAI	GCGC	1 cut(s)	67
Kpn2I	TCCGGA	1 cut(s)	127
KroI	GCCGGC	2 cut(s)	207, 562
KroNI	GCCGGC	2 cut(s)	209, 564
Kzo9I	GATC	4 cut(s)	49, 78, 124, 265
LmnI	GCTCC	3 cut(s)	130, 379, 489
LpnPI	CCDG	8 cut(s)	118, 141, 164, 189, 203, 221, 261, 576
Lsp1109I	GCAGC	1 cut(s)	357
LweI	GCATC	2 cut(s)	16, 583
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	252, 273
MaeIII	GTNAC	2 cut(s)	116, 401
MalI	GATC	4 cut(s)	51, 80, 126, 267
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	4 cut(s)	49, 78, 124, 265
MboII	GAAGA	2 cut(s)	44, 526
MhlI	GDGCHC	2 cut(s)	135, 471
MlyI	GAGTC	1 cut(s)	543
MmeI	TCCRAC	3 cut(s)	480, 525, 534
MnlI	CCTC	8 cut(s)	73, 275, 293, 299, 307, 346, 401, 481
MroI	TCCGGA	1 cut(s)	127
MroNI	GCCGGC	2 cut(s)	207, 562
MseI	TTAA	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	5 cut(s)	105, 128, 208, 248, 563
MspR9I	CCNGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	154, 379
NaeI	GCCGGC	2 cut(s)	209, 564
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	4 cut(s)	49, 78, 124, 265
NgoMIV	GCCGGC	2 cut(s)	207, 562
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	3 cut(s)	109, 132, 158
NmuCI	GTSAC	2 cut(s)	116, 401
NspI	RCATGY	1 cut(s)	454
PciI	ACATGT	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	2 cut(s)	229, 249
PdiI	GCCGGC	2 cut(s)	209, 564
PfeI	GAWTC	3 cut(s)	191, 234, 557
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	369, 372
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
PscI	ACATGT	1 cut(s)	450
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	3 cut(s)	109, 132, 158
PspPI	GGNCC	2 cut(s)	107, 410
RsaI	GTAC	4 cut(s)	216, 246, 255, 387
RsaNI	GTAC	4 cut(s)	215, 245, 254, 386
SaqAI	TTAA	1 cut(s)	625
SatI	GCNGC	2 cut(s)	368, 371
Sau3AI	GATC	4 cut(s)	49, 78, 124, 265
Sau96I	GGNCC	2 cut(s)	107, 410
ScaI	AGTACT	1 cut(s)	387
SchI	GAGTC	1 cut(s)	543
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	2 cut(s)	135, 471
SetI	ASST	8 cut(s)	90, 162, 181, 255, 276, 304, 442, 486
SfaNI	GCATC	2 cut(s)	16, 583
SsiI	CCGC	9 cut(s)	111, 165, 296, 368, 398, 445, 581, 596, 617
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	3 cut(s)	332, 390, 507
TaiI	ACGT	2 cut(s)	255, 276
TaqI	TCGA	1 cut(s)	237
TatI	WGTACW	2 cut(s)	214, 385
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	3 cut(s)	191, 234, 557
Tru1I	TTAA	1 cut(s)	625
Tru9I	TTAA	1 cut(s)	625
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	116, 401
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	2 cut(s)	116, 401
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	454
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.