Rh4AG026900

Armadillo/beta-catenin-like repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003482
Physical Location & Seq
Forward (+)
5155232 .. 5155486
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG026900.1

Sequence Viewer

Length: 255 bp
ATGGGGGAAGAAGAGCAGAGCAGCAGTCAAGGCAAAAAACCAGACCAACCCTCCGCGGCCGGAGAATCAAGTCTCCGGCAAGCCATTCAGTCCATCTCGTCCCTCATCTCCCTCACCTACTCCATCAAAATCTTCGCCGGAAAATGGAAAACCATAACAACCAAGCTCGGAGAACTCGACTCCAGCCTCGCCGCCGTCGAAAACTCCGACGGAGATGAAAACCCAGTTCTCTCCGGCGTTCTGTTGAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

84

Amino Acids

8.86

Weight (kDa)

4.76

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 26 - 81 6.3e-12 Domain of unknown function (DUF7032)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 56
AciI CCGC 3 cut(s) 54, 56, 192
AcoI YGGCCR 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 106
BbvI GCAGC 1 cut(s) 33
BccI CCATC 2 cut(s) 101, 131
BceAI ACGGC 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 3 cut(s) 22, 57, 192
BlsI GCNGC 3 cut(s) 23, 58, 193
BmrI ACTGGG 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 4 cut(s) 60, 76, 138, 234
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 1 cut(s) 59
BspACI CCGC 3 cut(s) 54, 56, 192
BspANI GGCC 1 cut(s) 59
BspFNI CGCG 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 81
BstDSI CCRYGG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 77
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 33
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 81
Cfr42I CCGCGG 1 cut(s) 57
CviJI RGCY 4 cut(s) 59, 83, 166, 186
CviKI_1 RGCY 4 cut(s) 59, 83, 166, 186
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EclXI CGGCCG 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 57
FaiI YATR 1 cut(s) 155
FaqI GGGAC 1 cut(s) 85
Fnu4HI GCNGC 3 cut(s) 22, 57, 192
Fsp4HI GCNGC 3 cut(s) 22, 57, 192
GluI GCNGC 3 cut(s) 22, 57, 192
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 59
HapII CCGG 4 cut(s) 60, 76, 138, 234
HinfI GANTC 2 cut(s) 65, 179
HpaII CCGG 4 cut(s) 60, 76, 138, 234
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 170, 208
Hpy99I CGWCG 2 cut(s) 200, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
KspI CCGCGG 1 cut(s) 57
LguI GCTCTTC 1 cut(s) 6
LpnPI CCDG 7 cut(s) 54, 73, 89, 151, 196, 237, 247
Lsp1109I GCAGC 1 cut(s) 33
MboII GAAGA 3 cut(s) 20, 23, 124
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 4 cut(s) 61, 113, 122, 197
MseI TTAA 1 cut(s) 253
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 4 cut(s) 60, 76, 138, 234
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 3 cut(s) 174, 195, 204
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 3 cut(s) 23, 58, 193
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
SacII CCGCGG 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 253
SatI GCNGC 3 cut(s) 22, 57, 192
SchI GAGTC 1 cut(s) 173
SetI ASST 2 cut(s) 119, 168
Sfr303I CCGCGG 1 cut(s) 57
SgrBI CCGCGG 1 cut(s) 57
SsiI CCGC 3 cut(s) 54, 56, 192
TaqI TCGA 2 cut(s) 177, 198
TauI GCSGC 2 cut(s) 59, 194
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 253
Tru9I TTAA 1 cut(s) 253
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.