RLG00000032570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003482
Physical Location & Seq
Forward (+)
16536227 .. 16536744
518 bp
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UTR
Exon/CDS
Intron
RLM00000032570

Sequence Viewer

Length: 363 bp
ATGTTGATTAATTTGGTCATAGATAGAGGAGAAGGATCTGGGGATGGAGGGATTGGGCTCGGAAGGGGAGAGGCAGGAGAGAGTAGGTTAGAGGATGAAGAAGGTGGAGCCGATGAGAATGCCAACGAGGATAAAGAAGAGGCTCGATTGCTTAGGAAGAAGGAGGAGGAGGAGGAGGGGGGGGAGGGGTCTAATATGTCAGCCTTGAGGAGTGAACAAAGGGTCGACAAAAATGACGTCTTTTTCCGGGAGGAGATTGGACGATCGGGGGTGGCTACAGTGGATTCAGATCATGGTTATGGAGGTGGTGATGGTGGTGGAAGAGGTCTTCCTATGTTTTCTGGGGATTCATTGGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.66

Weight (kDa)

4.28

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AccI GTMKAC 1 cut(s) 225
AclWI GGATC 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 237
AlwI GGATC 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AseI ATTAAT 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 320
BccI CCATC 2 cut(s) 38, 305
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BcnI CCSGG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 288
BseGI GGATG 3 cut(s) 49, 100, 361
BseJI GATNNNNATC 1 cut(s) 288
BseRI GAGGAG 7 cut(s) 42, 179, 182, 185, 188, 223, 266
Bsh1285I CGRYCG 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 247
BsmI GAATGC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 3 cut(s) 35, 263, 289
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 43
BssMI GATC 3 cut(s) 35, 263, 289
BssNI GRCGYC 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 132, 316
BstACI GRCGYC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 3 cut(s) 49, 100, 361
BstKTI GATC 3 cut(s) 38, 266, 292
BstMBI GATC 3 cut(s) 35, 263, 289
BstMCI CGRYCG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BtsCI GGATG 3 cut(s) 49, 100, 361
BtsIMutI CAGTG 1 cut(s) 285
CviAII CATG 1 cut(s) 293
CviJI RGCY 5 cut(s) 58, 110, 143, 203, 275
CviKI_1 RGCY 5 cut(s) 58, 110, 143, 203, 275
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 37, 265, 291
DpnII GATC 3 cut(s) 35, 263, 289
Eam1104I CTCTTC 2 cut(s) 132, 316
EarI CTCTTC 2 cut(s) 132, 316
Eco24I GRGCYC 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 1 cut(s) 296
FaiI YATR 5 cut(s) 20, 197, 294, 300, 335
FatI CATG 1 cut(s) 292
FblI GTMKAC 1 cut(s) 225
FokI GGATG 2 cut(s) 56, 107
FriOI GRGCYC 1 cut(s) 60
HapII CCGG 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 296
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 284, 347
HpaII CCGG 1 cut(s) 247
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 2 cut(s) 215, 226
Hpy188I TCNGA 2 cut(s) 62, 289
Hpy8I GTNNAC 2 cut(s) 215, 226
HpyAV CCTTC 4 cut(s) 26, 57, 95, 154
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 3 cut(s) 35, 263, 289
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 4 cut(s) 24, 60, 260, 327
MaeII ACGT 1 cut(s) 237
MalI GATC 3 cut(s) 37, 265, 291
MboI GATC 3 cut(s) 35, 263, 289
MboII GAAGA 5 cut(s) 110, 149, 169, 320, 333
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 10
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 297
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 248
NdeII GATC 3 cut(s) 35, 263, 289
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 1 cut(s) 109
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 284, 347
PfoI TCCNGGA 1 cut(s) 246
Ple19I CGATCG 1 cut(s) 266
PshBI ATTAAT 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 35
PvuI CGATCG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 297
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 9
Sau3AI GATC 3 cut(s) 35, 263, 289
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 60
SetI ASST 5 cut(s) 89, 106, 240, 307, 328
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 145, 225
TasI AATT 1 cut(s) 10
TfiI GAWTC 2 cut(s) 284, 347
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 111, 339
TspRI CASTG 1 cut(s) 285
VspI ATTAAT 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 225
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.