Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006422.1

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Forward (+)

126571 .. 127020

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006422.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgggggaagaagagcagagcagcagtcaaggcaaagaaccagaccaaccctccgccgccggagaatcaagtctccgacaagccattcagttcatcttgtccctcatctccctcacctactccatcaaaatcttcaccgaaaaatggaaaaccataacaaccaagctcaaagaactcaactccagcctcgccgccgtcgaaaactctgacggagatgaaaacccagttctctcctgcattctgttgaagactttaggtaccattaatgagtgccacgatcttgctcgccgctgcgtcgatctttcctactccggcaagcttttgatgcagagcgaccttgacaagctagtcgccaagctcgtcgccaagttcaatctccacgccggaagcctcccagaaatctacaacgccggcgtactgagtcaccgcttcgccatcttggtctcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

149

Amino Acids

16.28

Weight (kDa)

5.6

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	5 cut(s)	54, 57, 192, 289, 427
AfaI	GTAC	2 cut(s)	259, 417
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	247, 373
AluBI	AGCT	4 cut(s)	166, 319, 346, 358
AluI	AGCT	4 cut(s)	166, 319, 346, 358
Alw26I	GTCTC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	21, 291
AseI	ATTAAT	1 cut(s)	264
Asp718I	GGTACC	1 cut(s)	257
AsuHPI	GGTGA	3 cut(s)	106, 127, 416
BanI	GGYRCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	33, 278
BccI	CCATC	2 cut(s)	131, 443
BceAI	ACGGC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	5 cut(s)	22, 57, 192, 289, 292
BlsI	GCNGC	5 cut(s)	23, 58, 193, 290, 293
BmiI	GGNNCC	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	33, 278
BshNI	GGYRCC	1 cut(s)	257
BsiSI	CCGG	4 cut(s)	60, 312, 384, 411
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	277, 298
BspACI	CCGC	5 cut(s)	54, 57, 192, 289, 427
BspCNI	CTCAG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	259
BspQI	GCTCTTC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	410
BssMI	GATC	2 cut(s)	277, 298
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	3 cut(s)	286, 317, 412
BstDEI	CTNAG	1 cut(s)	419
BstKTI	GATC	2 cut(s)	280, 301
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	277, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 325
BstV1I	GCAGC	2 cut(s)	33, 278
BstV2I	GAAGAC	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	286, 317, 412
Cfr10I	RCCGGY	1 cut(s)	410
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	258, 416
CviJI	RGCY	7 cut(s)	83, 166, 186, 319, 346, 358, 390
CviKI_1	RGCY	7 cut(s)	83, 166, 186, 319, 346, 358, 390
CviQI	GTAC	2 cut(s)	258, 416
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	2 cut(s)	279, 300
DpnII	GATC	2 cut(s)	277, 298
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	43
FaiI	YATR	1 cut(s)	155
FaqI	GGGAC	1 cut(s)	85
Fnu4HI	GCNGC	5 cut(s)	22, 57, 192, 289, 292
Fsp4HI	GCNGC	5 cut(s)	22, 57, 192, 289, 292
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	5 cut(s)	22, 57, 192, 289, 292
GsuI	CTGGAG	1 cut(s)	166
HapII	CCGG	4 cut(s)	60, 312, 384, 411
HgaI	GACGC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	2 cut(s)	65, 421
HpaII	CCGG	4 cut(s)	60, 312, 384, 411
HphI	GGTGA	3 cut(s)	106, 127, 416
Hpy188I	TCNGA	2 cut(s)	77, 208
Hpy99I	CGWCG	3 cut(s)	200, 299, 365
HpyCH4V	TGCA	2 cut(s)	237, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 325
HpyF3I	CTNAG	1 cut(s)	419
KpnI	GGTACC	1 cut(s)	261
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	277, 298
LguI	GCTCTTC	1 cut(s)	6
LpnPI	CCDG	9 cut(s)	54, 73, 196, 237, 247, 325, 397, 408, 424
Lsp1109I	GCAGC	2 cut(s)	33, 278
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	2 cut(s)	279, 300
MboI	GATC	2 cut(s)	277, 298
MboII	GAAGA	4 cut(s)	20, 23, 124, 259
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	61, 113, 122, 197, 401
MreI	CGCCGGCG	1 cut(s)	410
MroNI	GCCGGC	1 cut(s)	410
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	4 cut(s)	60, 312, 384, 411
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	30, 325
NaeI	GCCGGC	1 cut(s)	412
NdeII	GATC	2 cut(s)	277, 298
NgoMIV	GCCGGC	1 cut(s)	410
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 357
PctI	GAATGC	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	5 cut(s)	23, 58, 193, 290, 293
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PshBI	ATTAAT	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	259
RsaI	GTAC	2 cut(s)	259, 417
RsaNI	GTAC	2 cut(s)	258, 416
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	5 cut(s)	22, 57, 192, 289, 292
Sau3AI	GATC	2 cut(s)	277, 298
SchI	GAGTC	1 cut(s)	430
SetI	ASST	7 cut(s)	119, 168, 259, 321, 339, 348, 360
SfaNI	GCATC	1 cut(s)	315
SgrAI	CRCCGGYG	1 cut(s)	410
SsiI	CCGC	5 cut(s)	54, 57, 192, 289, 427
SspMI	CTAG	1 cut(s)	347
TaqI	TCGA	2 cut(s)	198, 297
TauI	GCSGC	3 cut(s)	59, 194, 291
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	21, 291
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	82, 231
TspGWI	ACGGA	1 cut(s)	225
VspI	ATTAAT	1 cut(s)	264
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.