RchiOBHm_Chr1g0369641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003482
Physical Location & Seq
Forward (+)
59390752 .. 59391330
579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59387

Sequence Viewer

Length: 282 bp
ATGACGTCAGCCATCGTCTTCCTCTTGAAGTCAATTGTGCGATGTGGCTTACAAGGCCGGCTCAGATCTCCCCGATTCTGTGGGATGTGGTGTTTGGGGCTCCCATATTGCTTTCGCCGGCAGCTTGAAACCCAGCATACCTTATTGCATAGGAGCATCCGGATTAGATTAAATTGTTTGGCACATGGATGTTTATGGCTTCGAAACGTAGCGACAGCCATAGGACGAGGACAAGGACAATTTAATCAAGAAGATGGTTTCTCTCTATTTCTCTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.65

Weight (kDa)

10.66

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccIII TCCGGA 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 28, 128
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Aor13HI TCCGGA 1 cut(s) 159
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 121
AsuII TTCGAA 1 cut(s) 202
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 20, 248
BglII AGATCT 1 cut(s) 65
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 101
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 10
Bpu14I TTCGAA 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 159
Bse118I RCCGGY 2 cut(s) 57, 117
BseAI TCCGGA 1 cut(s) 159
BseGI GGATG 3 cut(s) 90, 156, 194
BseMII CTCAG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 57
BsiSI CCGG 3 cut(s) 58, 118, 160
BsnI GGCC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 159
Bsp143I GATC 1 cut(s) 65
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 75
BspEI TCCGGA 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 202
BsrFI RCCGGY 2 cut(s) 57, 117
BssAI RCCGGY 2 cut(s) 57, 117
BssMI GATC 1 cut(s) 65
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 59, 119
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 3 cut(s) 90, 156, 194
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuRI GGCC 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 3 cut(s) 90, 156, 194
Cac8I GCNNGC 2 cut(s) 59, 119
Cfr10I RCCGGY 2 cut(s) 57, 117
CviAII CATG 1 cut(s) 185
CviJI RGCY 8 cut(s) 11, 48, 57, 61, 100, 124, 199, 218
CviKI_1 RGCY 8 cut(s) 11, 48, 57, 61, 100, 124, 199, 218
DdeI CTNAG 1 cut(s) 62
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 1 cut(s) 188
FaiI YATR 6 cut(s) 106, 138, 150, 186, 196, 221
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 3 cut(s) 97, 143, 201
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 122
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 57
HapII CCGG 3 cut(s) 58, 118, 160
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 188
HinfI GANTC 1 cut(s) 75
HpaII CCGG 3 cut(s) 58, 118, 160
Hpy188I TCNGA 2 cut(s) 65, 281
Hpy188III TCNNGA 3 cut(s) 25, 160, 248
HpyCH4IV ACGT 2 cut(s) 5, 207
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 2 cut(s) 5, 207
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 188
Kpn2I TCCGGA 1 cut(s) 159
KroI GCCGGC 2 cut(s) 57, 117
KroNI GCCGGC 2 cut(s) 59, 119
Kzo9I GATC 1 cut(s) 65
LmnI GCTCC 2 cut(s) 105, 153
LpnPI CCDG 4 cut(s) 71, 131, 146, 173
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 165
MaeII ACGT 2 cut(s) 5, 207
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 2 cut(s) 10, 263
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 3 cut(s) 33, 172, 239
MnlI CCTC 2 cut(s) 32, 221
MroI TCCGGA 1 cut(s) 159
MroNI GCCGGC 2 cut(s) 57, 117
MseI TTAA 2 cut(s) 170, 243
MslI CAYNNNNRTG 1 cut(s) 187
MspI CCGG 3 cut(s) 58, 118, 160
MunI CAATTG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 54
NaeI GCCGGC 2 cut(s) 59, 119
NdeII GATC 1 cut(s) 65
NgoMIV GCCGGC 2 cut(s) 57, 117
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 101
NspV TTCGAA 1 cut(s) 202
PdiI GCCGGC 2 cut(s) 59, 119
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 187
SaqAI TTAA 2 cut(s) 170, 243
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 102
SetI ASST 4 cut(s) 8, 126, 143, 210
SfaNI GCATC 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 187
Sse9I AATT 3 cut(s) 33, 172, 239
TaiI ACGT 2 cut(s) 8, 210
TaqI TCGA 1 cut(s) 202
TasI AATT 3 cut(s) 33, 172, 239
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 170, 243
Tru9I TTAA 2 cut(s) 170, 243
TseI GCWGC 1 cut(s) 121
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.