Rh3DG160000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003482
Physical Location & Seq
Forward (+)
13854375 .. 13854870
496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG160000.1

Sequence Viewer

Length: 339 bp
ATGGTAGATCTGATCGACCTCCAGCAGAATCGGCTCAACGACGTCGTGGCGAATGAGCTCGAACCTGGGATTCCCGAAATGGTGCGCCACATTCTCCTTCCTCCCGGTGAAGAAATTGTCAATGACGATGACATCGTTCCCTCTGGAGAGCAACTTATCGACGAGGTGGGAGCCGACGAAGCCGGCGCCACCGGTGACGACGATCCGGAGCCTGCGCTTGCCGAGGCCGGCGGGGACCCTGCCGGCGTTGCTGCGGAGGTCGGTGGCGAAGGAGGCGGTGTTGATACGTTGATGGATCTGGGGAGAGATCTGGGGTGCTTGAAGGCTTTGGGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.45

Weight (kDa)

4.05

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 3 cut(s) 231, 254, 276
AclWI GGATC 2 cut(s) 197, 303
AcyI GRCGYC 2 cut(s) 42, 186
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 2 cut(s) 197, 303
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 251
AsiGI ACCGGT 1 cut(s) 191
AspLEI GCGC 3 cut(s) 87, 188, 217
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 119, 206
AvaII GGWCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 66
BcnI CCSGG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 189
BglII AGATCT 2 cut(s) 7, 307
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 66, 105
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 5 cut(s) 172, 187, 210, 236, 237
BmrFI CCNGG 2 cut(s) 66, 105
BpmI CTGGAG 2 cut(s) 5, 165
BpuMI CCSGG 1 cut(s) 105
BsaHI GRCGYC 2 cut(s) 42, 186
BsaJI CCNNGG 2 cut(s) 65, 222
BsaWI WCCGGW 2 cut(s) 191, 205
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse118I RCCGGY 4 cut(s) 182, 191, 227, 242
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 65, 222
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 6 cut(s) 105, 183, 192, 206, 228, 243
BslFI GGGAC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 60
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 5 cut(s) 7, 12, 202, 295, 307
BspACI CCGC 3 cut(s) 231, 254, 276
BspANI GGCC 1 cut(s) 227
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 5 cut(s) 172, 187, 210, 236, 237
BspPI GGATC 2 cut(s) 197, 303
BspT107I GGYRCC 1 cut(s) 185
BsrFI RCCGGY 4 cut(s) 182, 191, 227, 242
BssAI RCCGGY 4 cut(s) 182, 191, 227, 242
BssECI CCNNGG 2 cut(s) 65, 222
BssMI GATC 5 cut(s) 7, 12, 202, 295, 307
BssNI GRCGYC 2 cut(s) 42, 186
Bst2UI CCWGG 1 cut(s) 66
BstACI GRCGYC 2 cut(s) 42, 186
BstC8I GCNNGC 5 cut(s) 184, 213, 219, 229, 244
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 3 cut(s) 87, 188, 217
BstKTI GATC 5 cut(s) 10, 15, 205, 298, 310
BstMBI GATC 5 cut(s) 7, 12, 202, 295, 307
BstMWI GCNNNNNNNGC 4 cut(s) 31, 179, 248, 273
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 64, 103
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 3 cut(s) 7, 295, 307
BstYI RGATCY 3 cut(s) 7, 295, 307
BsuRI GGCC 1 cut(s) 227
Cac8I GCNNGC 5 cut(s) 184, 213, 219, 229, 244
CfoI GCGC 3 cut(s) 87, 188, 217
Cfr10I RCCGGY 4 cut(s) 182, 191, 227, 242
Cfr13I GGNCC 1 cut(s) 235
CspAI ACCGGT 1 cut(s) 191
CviJI RGCY 7 cut(s) 34, 58, 173, 182, 211, 227, 326
CviKI_1 RGCY 7 cut(s) 34, 58, 173, 182, 211, 227, 326
DinI GGCGCC 1 cut(s) 187
DpnI GATC 5 cut(s) 9, 14, 204, 297, 309
DpnII GATC 5 cut(s) 7, 12, 202, 295, 307
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 60
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
FaqI GGGAC 1 cut(s) 248
FauI CCCGC 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 252
GlaI GCGC 3 cut(s) 86, 187, 216
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 5, 165
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 227
HapII CCGG 6 cut(s) 105, 183, 192, 206, 228, 243
HhaI GCGC 3 cut(s) 87, 188, 217
Hin1I GRCGYC 2 cut(s) 42, 186
Hin6I GCGC 3 cut(s) 85, 186, 215
HinP1I GCGC 3 cut(s) 85, 186, 215
HinfI GANTC 2 cut(s) 28, 70
HpaII CCGG 6 cut(s) 105, 183, 192, 206, 228, 243
HphI GGTGA 2 cut(s) 119, 206
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 74, 144, 206
Hpy99I CGWCG 5 cut(s) 44, 47, 164, 179, 203
HpyAV CCTTC 3 cut(s) 107, 263, 316
HpyCH4IV ACGT 2 cut(s) 42, 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 179, 248, 273
HpySE526I ACGT 2 cut(s) 42, 287
Hsp92I GRCGYC 2 cut(s) 42, 186
HspAI GCGC 3 cut(s) 85, 186, 215
KasI GGCGCC 1 cut(s) 185
KflI GGGWCCC 1 cut(s) 235
Kpn2I TCCGGA 1 cut(s) 205
KroI GCCGGC 3 cut(s) 182, 227, 242
KroNI GCCGGC 3 cut(s) 184, 229, 244
Kzo9I GATC 5 cut(s) 7, 12, 202, 295, 307
LmnI GCTCC 2 cut(s) 170, 208
Lsp1109I GCAGC 1 cut(s) 238
MaeII ACGT 2 cut(s) 42, 287
MaeIII GTNAC 1 cut(s) 194
MalI GATC 5 cut(s) 9, 14, 204, 297, 309
MboI GATC 5 cut(s) 7, 12, 202, 295, 307
MboII GAAGA 1 cut(s) 122
MflI RGATCY 3 cut(s) 7, 295, 307
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 114
Mly113I GGCGCC 1 cut(s) 186
MnlI CCTC 7 cut(s) 29, 111, 151, 157, 217, 250, 266
MroI TCCGGA 1 cut(s) 205
MroNI GCCGGC 3 cut(s) 182, 227, 242
MspI CCGG 6 cut(s) 105, 183, 192, 206, 228, 243
MspR9I CCNGG 2 cut(s) 66, 105
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 31, 179, 248, 273
NaeI GCCGGC 3 cut(s) 184, 229, 244
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 105
NdeII GATC 5 cut(s) 7, 12, 202, 295, 307
NgoMIV GCCGGC 3 cut(s) 182, 227, 242
NlaIV GGNNCC 5 cut(s) 172, 187, 210, 236, 237
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdiI GCCGGC 3 cut(s) 184, 229, 244
PfeI GAWTC 2 cut(s) 28, 70
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 1 cut(s) 253
PluTI GGCGCC 1 cut(s) 189
PpuMI RGGWCCY 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 5 cut(s) 172, 187, 210, 236, 237
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 3 cut(s) 7, 295, 307
SacI GAGCTC 1 cut(s) 60
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 5 cut(s) 7, 12, 202, 295, 307
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 66, 105
SduI GDGCHC 1 cut(s) 60
SetI ASST 7 cut(s) 21, 45, 60, 67, 168, 261, 290
SfoI GGCGCC 1 cut(s) 187
SgrAI CRCCGGYG 1 cut(s) 191
SinI GGWCC 1 cut(s) 235
Sse9I AATT 1 cut(s) 114
SsiI CCGC 3 cut(s) 231, 254, 276
SspDI GGCGCC 1 cut(s) 185
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 64, 103
TaiI ACGT 2 cut(s) 45, 290
TaqI TCGA 3 cut(s) 15, 60, 159
TasI AATT 1 cut(s) 114
TfiI GAWTC 2 cut(s) 28, 70
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 235
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.