Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Forward (+)

13678596 .. 13679099

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG159500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTAGATCTGATCGACCTCCAGCAGAATCGGCTCAACGACGTCGTGGCGAATGAGCTCGAACCTGGGATTCCCGAAATGGTGCGCCACATTCTCCTTCCTCCCGGTGAAGAAATTGTCAATGACGATGACGTCGTTCCCTCTGGAGAGCAACTGATCGACGAGGTGGGAGCCGACGAAGCCGGCGCCACCGGTGACGACGATCCTGAGCCTGCGCTTGCCGAGGCCGGCGGGGACCCTGCCGGCGTTGCTGCGGAGGTCGGTGGAGAAGGAGGCGGTGTTGATACGGTCGTGGAGGGAGGAGGAGGAGAAGGATCGGGGGATGGAGGGATTGGGCTCGGAAGGGGAGAGGCGGGAGAGAGTGGGCTGGAGGATGAAGAAGGTGGAGCCGATGAGAATGCCGACGAGGATGAAGAGGAGGCGTTGCTCTCTGAAGATGTAGTTGATGGATCTGGGGAGAGATCTGGGGTGCTTGAAGGCTTTGGGGGAGTAGGAGGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

16.43

Weight (kDa)

4.05

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	2 cut(s)	45, 135
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	4 cut(s)	231, 254, 276, 353
AclWI	GGATC	3 cut(s)	197, 322, 457
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	3 cut(s)	42, 132, 186
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	3 cut(s)	197, 322, 457
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	251
AsiGI	ACCGGT	1 cut(s)	191
AspLEI	GCGC	3 cut(s)	87, 188, 217
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	119, 206
AvaII	GGWCC	1 cut(s)	235
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	60, 339
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	317, 440
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	189
BglII	AGATCT	2 cut(s)	7, 461
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	66, 105
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	5 cut(s)	172, 187, 236, 237, 388
BmrFI	CCNGG	2 cut(s)	66, 105
BpmI	CTGGAG	3 cut(s)	5, 165, 389
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	105
BsaHI	GRCGYC	3 cut(s)	42, 132, 186
BsaJI	CCNNGG	2 cut(s)	65, 222
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bse118I	RCCGGY	4 cut(s)	182, 191, 227, 242
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	65, 222
BseGI	GGATG	3 cut(s)	328, 379, 415
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	4 cut(s)	315, 318, 321, 431
BseXI	GCAGC	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	105, 183, 192, 228, 243
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	60, 339
Bsp143I	GATC	7 cut(s)	7, 12, 156, 202, 314, 449, 461
BspACI	CCGC	4 cut(s)	231, 254, 276, 353
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	5 cut(s)	172, 187, 236, 237, 388
BspPI	GGATC	3 cut(s)	197, 322, 457
BspT107I	GGYRCC	1 cut(s)	185
BsrFI	RCCGGY	4 cut(s)	182, 191, 227, 242
BssAI	RCCGGY	4 cut(s)	182, 191, 227, 242
BssECI	CCNNGG	2 cut(s)	65, 222
BssMI	GATC	7 cut(s)	7, 12, 156, 202, 314, 449, 461
BssNI	GRCGYC	3 cut(s)	42, 132, 186
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	3 cut(s)	42, 132, 186
BstC8I	GCNNGC	5 cut(s)	184, 213, 219, 229, 244
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	3 cut(s)	328, 379, 415
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	87, 188, 217
BstKTI	GATC	7 cut(s)	10, 15, 159, 205, 317, 452, 464
BstMBI	GATC	7 cut(s)	7, 12, 156, 202, 314, 449, 461
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 179, 248
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	64, 103
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	3 cut(s)	7, 449, 461
BstYI	RGATCY	3 cut(s)	7, 449, 461
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	328, 379, 415
Cac8I	GCNNGC	5 cut(s)	184, 213, 219, 229, 244
CfoI	GCGC	3 cut(s)	87, 188, 217
Cfr10I	RCCGGY	4 cut(s)	182, 191, 227, 242
Cfr13I	GGNCC	1 cut(s)	235
CspAI	ACCGGT	1 cut(s)	191
DdeI	CTNAG	1 cut(s)	207
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	7 cut(s)	9, 14, 158, 204, 316, 451, 463
DpnII	GATC	7 cut(s)	7, 12, 156, 202, 314, 449, 461
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	60, 339
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	64
EcoT38I	GRGCYC	2 cut(s)	60, 339
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
FaqI	GGGAC	1 cut(s)	248
FauI	CCCGC	2 cut(s)	224, 346
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	3 cut(s)	335, 386, 422
FriOI	GRGCYC	2 cut(s)	60, 339
Fsp4HI	GCNGC	1 cut(s)	252
GlaI	GCGC	3 cut(s)	86, 187, 216
GluI	GCNGC	1 cut(s)	252
GsuI	CTGGAG	3 cut(s)	5, 165, 389
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	5 cut(s)	105, 183, 192, 228, 243
HhaI	GCGC	3 cut(s)	87, 188, 217
Hin1I	GRCGYC	3 cut(s)	42, 132, 186
Hin6I	GCGC	3 cut(s)	85, 186, 215
HinP1I	GCGC	3 cut(s)	85, 186, 215
HinfI	GANTC	2 cut(s)	28, 70
HpaII	CCGG	5 cut(s)	105, 183, 192, 228, 243
HphI	GGTGA	2 cut(s)	119, 206
Hpy188I	TCNGA	3 cut(s)	12, 341, 433
Hpy188III	TCNNGA	3 cut(s)	74, 144, 206
Hpy99I	CGWCG	7 cut(s)	44, 47, 137, 164, 179, 203, 407
HpyAV	CCTTC	6 cut(s)	107, 263, 305, 336, 374, 470
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	42, 132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 179, 248
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	42, 132
Hsp92I	GRCGYC	3 cut(s)	42, 132, 186
HspAI	GCGC	3 cut(s)	85, 186, 215
KasI	GGCGCC	1 cut(s)	185
KflI	GGGWCCC	1 cut(s)	235
KroI	GCCGGC	3 cut(s)	182, 227, 242
KroNI	GCCGGC	3 cut(s)	184, 229, 244
Kzo9I	GATC	7 cut(s)	7, 12, 156, 202, 314, 449, 461
LmnI	GCTCC	2 cut(s)	170, 386
Lsp1109I	GCAGC	1 cut(s)	238
MaeII	ACGT	2 cut(s)	42, 132
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	7 cut(s)	9, 14, 158, 204, 316, 451, 463
MboI	GATC	7 cut(s)	7, 12, 156, 202, 314, 449, 461
MboII	GAAGA	4 cut(s)	122, 389, 425, 446
MflI	RGATCY	3 cut(s)	7, 449, 461
MhlI	GDGCHC	2 cut(s)	60, 339
MluCI	AATT	1 cut(s)	114
Mly113I	GGCGCC	1 cut(s)	186
MroNI	GCCGGC	3 cut(s)	182, 227, 242
MspI	CCGG	5 cut(s)	105, 183, 192, 228, 243
MspR9I	CCNGG	2 cut(s)	66, 105
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	31, 179, 248
NaeI	GCCGGC	3 cut(s)	184, 229, 244
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	7 cut(s)	7, 12, 156, 202, 314, 449, 461
NgoMIV	GCCGGC	3 cut(s)	182, 227, 242
NlaIV	GGNNCC	5 cut(s)	172, 187, 236, 237, 388
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	403
PdiI	GCCGGC	3 cut(s)	184, 229, 244
PfeI	GAWTC	2 cut(s)	28, 70
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	253
PluTI	GGCGCC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	5 cut(s)	172, 187, 236, 237, 388
PspPI	GGNCC	1 cut(s)	235
PspPPI	RGGWCCY	1 cut(s)	235
PsuI	RGATCY	3 cut(s)	7, 449, 461
SacI	GAGCTC	1 cut(s)	60
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	7 cut(s)	7, 12, 156, 202, 314, 449, 461
Sau96I	GGNCC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	66, 105
SduI	GDGCHC	2 cut(s)	60, 339
SetI	ASST	8 cut(s)	21, 45, 60, 67, 135, 168, 261, 385
SfoI	GGCGCC	1 cut(s)	187
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	235
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	4 cut(s)	231, 254, 276, 353
SspDI	GGCGCC	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	64, 103
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	45, 135
TaqI	TCGA	3 cut(s)	15, 60, 159
TasI	AATT	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	28, 70
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	390, 426
VpaK11BI	GGWCC	1 cut(s)	235
ZraI	GACGTC	2 cut(s)	43, 133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.