RLG00000010725

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003482
Physical Location & Seq
Reverse (-)
3936927 .. 3938996
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010725

Sequence Viewer

Length: 837 bp
ATGGTTAACTCTGAAGAACCCAGCAAGCTCATCTCCAAGGCTCATCGTCTTCCTCCATTTCCCTCCTTTCCAAACCCGACAACCCACTCTCGTATCCAATCAAATCCTCACCAACAAAAGGCCCCATCAAGCTCAAATTCACTGGCACCAAATCCTTATCCGAGAAATTGGGTCGACCGGAGTTTAACTCCGCCACCGAAAGCTGGACATGCCTTTCCAAGGGATCAAGAAGGAGAGGATGCAAAGCTAGAGATCTCGGGATGGGTCAGGAAGCTTCTGATGCAGAGCTACCTGGACAAGCTCGCCACTAAGTTCTATTTCCCTGCCGGAAGCTTCTCCGAGATCTACAACGCCGACCTGACTCACCGTTTTGCCATCGTGCATATTATTGCTACTGACGGCCAATCGTGTTCTGGGAAGACCCCAATTGTTGTGCGGAGAAATATCAGAAGCAATTGGCATAAGGGAGAACTGGGTTTTCAAGAACGGTTGGATCGATATCAACCCGATTGGTTTCACGACCCGAAACGGCTCGCGGCAGGCTCGCACCGCCACGTGGTGGGCAATGTTCACGCCGGCGCGGTCTCCGGCGAGGAAGCAGCGGGAGCAGTCAGCGAGGTCAGGGAGGGAGTCGGGGTTTTGGTCGAGGAATTTGAGGACGTCGAGGCCGTCGTCGTACTGGCAGGGGTAGCCGTGCTCCGGGGAGAGGCGGTAGTTGACGGAGACTACGACGGCGGGGATTTCGCGGGCGAATTTGCTGCAGACGGCGTCGTAGGCGTAGGAGTCGGGGCTGAGAAAGTTGAAGCCGCCGCCGTGGAAGAAAACGACGACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

30.13

Weight (kDa)

5.46

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 145
AccB7I CCANNNNNTGG 1 cut(s) 559
AccI GTMKAC 1 cut(s) 174
AccII CGCG 3 cut(s) 536, 581, 746
AclWI GGATC 2 cut(s) 231, 501
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 3 cut(s) 136, 650, 752
AcuI CTGAAG 1 cut(s) 33
AcvI CACGTG 1 cut(s) 556
AcyI GRCGYC 2 cut(s) 660, 768
AdeI CACNNNGTG 1 cut(s) 559
AfaI GTAC 1 cut(s) 678
AfiI CCNNNNNNNGG 7 cut(s) 118, 203, 219, 556, 559, 699, 706
AgsI TTSAA 2 cut(s) 482, 803
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 8 cut(s) 28, 132, 203, 247, 274, 288, 301, 333
AluI AGCT 8 cut(s) 28, 132, 203, 247, 274, 288, 301, 333
Alw21I GWGCWC 1 cut(s) 699
Alw26I GTCTC 2 cut(s) 589, 717
AlwI GGATC 2 cut(s) 231, 501
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 3 cut(s) 120, 400, 666
ApeKI GCWGC 2 cut(s) 599, 758
ApoI RAATTY 3 cut(s) 136, 650, 752
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 701
AsuHPI GGTGA 2 cut(s) 101, 356
AvaI CYCGRG 1 cut(s) 256
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BanI GGYRCC 1 cut(s) 145
BbrPI CACGTG 1 cut(s) 556
BbsI GAAGAC 2 cut(s) 41, 425
Bbv12I GWGCWC 1 cut(s) 699
BbvI GCAGC 2 cut(s) 611, 745
BccI CCATC 3 cut(s) 133, 255, 383
BceAI ACGGC 7 cut(s) 415, 545, 653, 677, 748, 781, 797
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BciT130I CCWGG 1 cut(s) 293
BciVI GTATCC 1 cut(s) 104
BcnI CCSGG 1 cut(s) 701
BcoDI GTCTC 2 cut(s) 589, 717
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 759
BfuI GTATCC 1 cut(s) 104
BglII AGATCT 2 cut(s) 252, 342
BisI GCNGC 5 cut(s) 537, 600, 759, 807, 810
BlsI GCNGC 5 cut(s) 538, 601, 760, 808, 811
Bme1390I CCNGG 2 cut(s) 293, 701
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 123, 147
BmrFI CCNGG 2 cut(s) 293, 701
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 2 cut(s) 229, 270
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 2 cut(s) 41, 425
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpuMI CCSGG 1 cut(s) 701
Bsa29I ATCGAT 1 cut(s) 496
BsaAI YACGTR 1 cut(s) 556
BsaBI GATNNNNATC 1 cut(s) 498
BsaHI GRCGYC 2 cut(s) 660, 768
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 4 cut(s) 36, 218, 700, 813
BsaWI WCCGGW 1 cut(s) 177
BsaXI ACNNNNNCTCC 4 cut(s) 621, 651, 696, 726
Bsc4I CCNNNNNNNGG 7 cut(s) 118, 203, 219, 556, 559, 699, 706
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 3 cut(s) 147, 477, 684
Bse3DI GCAATG 1 cut(s) 571
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 293
BseCI ATCGAT 1 cut(s) 496
BseDI CCNNGG 4 cut(s) 36, 218, 700, 813
BseGI GGATG 2 cut(s) 244, 266
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 7 cut(s) 118, 203, 219, 556, 559, 699, 706
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 3 cut(s) 147, 477, 684
BseXI GCAGC 2 cut(s) 611, 745
BseYI CCCAGC 1 cut(s) 20
Bsh1236I CGCG 3 cut(s) 536, 581, 746
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 3 cut(s) 122, 402, 668
BshNI GGYRCC 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 496
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 699
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 5 cut(s) 178, 327, 576, 588, 700
BslI CCNNNNNNNGG 7 cut(s) 118, 203, 219, 556, 559, 699, 706
BsmAI GTCTC 2 cut(s) 589, 717
BsnI GGCC 3 cut(s) 122, 402, 668
Bso31I GGTCTC 1 cut(s) 589
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 699
Bsp143I GATC 4 cut(s) 223, 252, 342, 493
BspANI GGCC 3 cut(s) 122, 402, 668
BspCNI CTCAG 1 cut(s) 784
BspDI ATCGAT 1 cut(s) 496
BspFNI CGCG 3 cut(s) 536, 581, 746
BspLI GGNNCC 2 cut(s) 123, 147
BspMAI CTGCAG 1 cut(s) 763
BspPI GGATC 2 cut(s) 231, 501
BspT107I GGYRCC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 571
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 3 cut(s) 147, 477, 684
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 4 cut(s) 36, 218, 700, 813
BssMI GATC 4 cut(s) 223, 252, 342, 493
BssNI GRCGYC 2 cut(s) 660, 768
BssT1I CCWWGG 2 cut(s) 36, 218
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 368, 489
BstACI GRCGYC 2 cut(s) 660, 768
BstBAI YACGTR 1 cut(s) 556
BstC8I GCNNGC 7 cut(s) 26, 303, 534, 541, 545, 577, 748
BstDEI CTNAG 2 cut(s) 309, 792
BstDSI CCRYGG 1 cut(s) 813
BstENI CCTNNNNNAGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 244, 266
BstFNI CGCG 3 cut(s) 536, 581, 746
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 4 cut(s) 226, 255, 345, 496
BstMAI GTCTC 2 cut(s) 589, 717
BstMBI GATC 4 cut(s) 223, 252, 342, 493
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 6 cut(s) 209, 280, 549, 605, 689, 774
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 291, 699
BstSFI CTRYAG 1 cut(s) 759
BstUI CGCG 3 cut(s) 536, 581, 746
BstV1I GCAGC 2 cut(s) 611, 745
BstV2I GAAGAC 2 cut(s) 41, 425
BstX2I RGATCY 2 cut(s) 252, 342
BstYI RGATCY 2 cut(s) 252, 342
Bsu15I ATCGAT 1 cut(s) 496
BsuI GTATCC 1 cut(s) 104
BsuRI GGCC 3 cut(s) 122, 402, 668
BsuTUI ATCGAT 1 cut(s) 496
BtgI CCRYGG 1 cut(s) 813
BtsCI GGATG 2 cut(s) 244, 266
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 7 cut(s) 26, 303, 534, 541, 545, 577, 748
CfoI GCGC 1 cut(s) 581
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 496
CseI GACGC 1 cut(s) 757
Csp6I GTAC 1 cut(s) 677
CviAII CATG 1 cut(s) 209
CviQI GTAC 1 cut(s) 677
DdeI CTNAG 2 cut(s) 309, 792
DpnI GATC 4 cut(s) 225, 254, 344, 495
DpnII GATC 4 cut(s) 223, 252, 342, 493
DraIII CACNNNGTG 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 400
EciI GGCGGA 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 36, 218
Eco31I GGTCTC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 500
Eco57I CTGAAG 1 cut(s) 33
Eco72I CACGTG 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 291
EcoRV GATATC 1 cut(s) 500
EcoT14I CCWWGG 2 cut(s) 36, 218
ErhI CCWWGG 2 cut(s) 36, 218
FaeI CATG 1 cut(s) 212
FaiI YATR 3 cut(s) 210, 384, 462
FatI CATG 1 cut(s) 208
FauI CCCGC 3 cut(s) 595, 728, 739
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 5 cut(s) 537, 600, 759, 807, 810
FokI GGATG 2 cut(s) 251, 273
Fsp4HI GCNGC 5 cut(s) 537, 600, 759, 807, 810
FspBI CTAG 1 cut(s) 248
GlaI GCGC 1 cut(s) 580
GluI GCNGC 5 cut(s) 537, 600, 759, 807, 810
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 3 cut(s) 122, 402, 668
HapII CCGG 5 cut(s) 178, 327, 576, 588, 700
HgaI GACGC 1 cut(s) 757
HhaI GCGC 1 cut(s) 581
Hin1I GRCGYC 2 cut(s) 660, 768
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HincII GTYRAC 3 cut(s) 7, 175, 718
HindII GTYRAC 3 cut(s) 7, 175, 718
HindIII AAGCTT 2 cut(s) 272, 331
HinfI GANTC 3 cut(s) 361, 630, 783
HpaI GTTAAC 1 cut(s) 7
HpaII CCGG 5 cut(s) 178, 327, 576, 588, 700
HphI GGTGA 2 cut(s) 101, 356
Hpy166II GTNNAC 4 cut(s) 7, 175, 571, 718
Hpy188I TCNGA 5 cut(s) 13, 162, 279, 340, 449
Hpy188III TCNNGA 5 cut(s) 227, 258, 268, 482, 518
Hpy8I GTNNAC 4 cut(s) 7, 175, 571, 718
Hpy99I CGWCG 7 cut(s) 665, 674, 677, 734, 773, 830, 833
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 368, 489
HpyCH4IV ACGT 2 cut(s) 555, 660
HpyCH4V TGCA 4 cut(s) 242, 283, 382, 761
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 280, 549, 605, 689, 774
HpyF3I CTNAG 2 cut(s) 309, 792
HpySE526I ACGT 2 cut(s) 555, 660
Hsp92I GRCGYC 2 cut(s) 660, 768
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 1 cut(s) 579
KroI GCCGGC 1 cut(s) 575
KroNI GCCGGC 1 cut(s) 577
KspAI GTTAAC 1 cut(s) 7
Kzo9I GATC 4 cut(s) 223, 252, 342, 493
LmnI GCTCC 2 cut(s) 605, 702
Lsp1109I GCAGC 2 cut(s) 611, 745
LweI GCATC 2 cut(s) 229, 270
MaeI CTAG 1 cut(s) 248
MaeII ACGT 2 cut(s) 555, 660
MalI GATC 4 cut(s) 225, 254, 344, 495
MboI GATC 4 cut(s) 223, 252, 342, 493
MboII GAAGA 4 cut(s) 26, 41, 430, 830
MfeI CAATTG 2 cut(s) 426, 454
MflI RGATCY 2 cut(s) 252, 342
MhlI GDGCHC 1 cut(s) 699
MluCI AATT 6 cut(s) 136, 166, 426, 454, 650, 752
MlyI GAGTC 3 cut(s) 355, 639, 792
MmeI TCCRAC 1 cut(s) 471
MreI CGCCGGCG 1 cut(s) 575
MroNI GCCGGC 1 cut(s) 575
MseI TTAA 2 cut(s) 6, 185
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 5 cut(s) 178, 327, 576, 588, 700
MspR9I CCNGG 2 cut(s) 293, 701
MunI CAATTG 2 cut(s) 426, 454
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 3 cut(s) 536, 581, 746
MwoI GCNNNNNNNGC 6 cut(s) 209, 280, 549, 605, 689, 774
NaeI GCCGGC 1 cut(s) 577
NciI CCSGG 1 cut(s) 701
NdeII GATC 4 cut(s) 223, 252, 342, 493
NgoMIV GCCGGC 1 cut(s) 575
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 123, 147
NspI RCATGY 1 cut(s) 212
PcsI WCGNNNNNNNCGW 4 cut(s) 493, 666, 669, 726
PdiI GCCGGC 1 cut(s) 577
PflFI GACNNNGTC 1 cut(s) 767
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 5 cut(s) 538, 601, 760, 808, 811
PleI GAGTC 3 cut(s) 355, 638, 791
PmaCI CACGTG 1 cut(s) 556
PmlI CACGTG 1 cut(s) 556
PpsI GAGTC 3 cut(s) 355, 638, 791
Ppu21I YACGTR 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 291
PspCI CACGTG 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 123, 147
PspPI GGNCC 1 cut(s) 121
PstI CTGCAG 1 cut(s) 763
PsuI RGATCY 2 cut(s) 252, 342
PsyI GACNNNGTC 1 cut(s) 767
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 6, 185
SatI GCNGC 5 cut(s) 537, 600, 759, 807, 810
Sau3AI GATC 4 cut(s) 223, 252, 342, 493
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 3 cut(s) 355, 639, 792
ScrFI CCNGG 2 cut(s) 293, 701
SduI GDGCHC 1 cut(s) 699
SfaNI GCATC 2 cut(s) 229, 270
SfcI CTRYAG 1 cut(s) 759
SgrAI CRCCGGYG 1 cut(s) 575
Sse9I AATT 6 cut(s) 136, 166, 426, 454, 650, 752
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 291, 699
StyI CCWWGG 2 cut(s) 36, 218
TaaI ACNGT 2 cut(s) 368, 489
TaiI ACGT 2 cut(s) 558, 663
TaqI TCGA 4 cut(s) 174, 496, 645, 663
TasI AATT 6 cut(s) 136, 166, 426, 454, 650, 752
TauI GCSGC 3 cut(s) 539, 809, 812
Tru1I TTAA 2 cut(s) 6, 185
Tru9I TTAA 2 cut(s) 6, 185
TscAI CASTG 1 cut(s) 147
TseI GCWGC 2 cut(s) 599, 758
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 1 cut(s) 147
Tth111I GACNNNGTC 1 cut(s) 767
Van91I CCANNNNNTGG 1 cut(s) 559
XagI CCTNNNNNAGG 1 cut(s) 217
XapI RAATTY 3 cut(s) 136, 650, 752
XceI RCATGY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 248
ZraI GACGTC 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.