No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD11G1310000.v1.1 |
| pyrus_communis | pycom03g22820 pycom11g27090 |
| rosa_chinensis | RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231 |
| rosa_laevigata | RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570 |
| rosa_multiflora | Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600 |
| rosa_samantha | Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 156, 198 |
| AcsI | RAATTY | 2 cut(s) | 20, 95 |
| AgsI | TTSAA | 1 cut(s) | 95 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 127, 159 |
| AluBI | AGCT | 1 cut(s) | 78 |
| AluI | AGCT | 1 cut(s) | 78 |
| Alw26I | GTCTC | 1 cut(s) | 110 |
| ApoI | RAATTY | 2 cut(s) | 20, 95 |
| BccI | CCATC | 1 cut(s) | 233 |
| BceAI | ACGGC | 1 cut(s) | 96 |
| BcoDI | GTCTC | 1 cut(s) | 110 |
| BfaI | CTAG | 2 cut(s) | 132, 254 |
| BmiI | GGNNCC | 1 cut(s) | 301 |
| BpmI | CTGGAG | 1 cut(s) | 302 |
| Bse1I | ACTGG | 1 cut(s) | 51 |
| BseGI | GGATG | 2 cut(s) | 244, 292 |
| BseMII | CTCAG | 1 cut(s) | 121 |
| BseNI | ACTGG | 1 cut(s) | 51 |
| BsgI | GTGCAG | 1 cut(s) | 169 |
| Bsh1285I | CGRYCG | 1 cut(s) | 233 |
| BsiEI | CGRYCG | 1 cut(s) | 233 |
| BslFI | GGGAC | 1 cut(s) | 58 |
| BsmAI | GTCTC | 1 cut(s) | 110 |
| BsmFI | GGGAC | 1 cut(s) | 58 |
| Bsp143I | GATC | 1 cut(s) | 230 |
| BspACI | CCGC | 2 cut(s) | 156, 198 |
| BspCNI | CTCAG | 1 cut(s) | 120 |
| BspLI | GGNNCC | 1 cut(s) | 301 |
| BsrI | ACTGG | 1 cut(s) | 51 |
| BssMI | GATC | 1 cut(s) | 230 |
| Bst6I | CTCTTC | 1 cut(s) | 253 |
| BstDEI | CTNAG | 1 cut(s) | 107 |
| BstF5I | GGATG | 2 cut(s) | 244, 292 |
| BstKTI | GATC | 1 cut(s) | 233 |
| BstMAI | GTCTC | 1 cut(s) | 110 |
| BstMBI | GATC | 1 cut(s) | 230 |
| BstMCI | CGRYCG | 1 cut(s) | 233 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 84 |
| BtsCI | GGATG | 2 cut(s) | 244, 292 |
| BtsI | GCAGTG | 1 cut(s) | 157 |
| BtsIMutI | CAGTG | 1 cut(s) | 157 |
| CviJI | RGCY | 5 cut(s) | 78, 111, 253, 280, 302 |
| CviKI_1 | RGCY | 5 cut(s) | 78, 111, 253, 280, 302 |
| DdeI | CTNAG | 1 cut(s) | 107 |
| DpnI | GATC | 1 cut(s) | 232 |
| DpnII | GATC | 1 cut(s) | 230 |
| Eam1104I | CTCTTC | 1 cut(s) | 253 |
| EarI | CTCTTC | 1 cut(s) | 253 |
| EcoRI | GAATTC | 2 cut(s) | 20, 95 |
| FaiI | YATR | 2 cut(s) | 60, 316 |
| FaqI | GGGAC | 1 cut(s) | 58 |
| FokI | GGATG | 2 cut(s) | 251, 299 |
| FspBI | CTAG | 2 cut(s) | 132, 254 |
| GsuI | CTGGAG | 1 cut(s) | 302 |
| Hpy166II | GTNNAC | 1 cut(s) | 217 |
| Hpy188I | TCNGA | 1 cut(s) | 119 |
| Hpy188III | TCNNGA | 1 cut(s) | 92 |
| Hpy8I | GTNNAC | 1 cut(s) | 217 |
| HpyAV | CCTTC | 4 cut(s) | 129, 215, 287, 304 |
| HpyCH4V | TGCA | 1 cut(s) | 150 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 84 |
| HpyF3I | CTNAG | 1 cut(s) | 107 |
| Kzo9I | GATC | 1 cut(s) | 230 |
| LmnI | GCTCC | 1 cut(s) | 299 |
| LpnPI | CCDG | 2 cut(s) | 64, 266 |
| MaeI | CTAG | 2 cut(s) | 132, 254 |
| MaeIII | GTNAC | 1 cut(s) | 37 |
| MalI | GATC | 1 cut(s) | 232 |
| MboI | GATC | 1 cut(s) | 230 |
| MboII | GAAGA | 2 cut(s) | 270, 302 |
| MluCI | AATT | 2 cut(s) | 20, 95 |
| MnlI | CCTC | 5 cut(s) | 172, 188, 236, 277, 320 |
| MseI | TTAA | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 84 |
| NdeII | GATC | 1 cut(s) | 230 |
| NlaIV | GGNNCC | 1 cut(s) | 301 |
| NmuCI | GTSAC | 1 cut(s) | 37 |
| Ple19I | CGATCG | 1 cut(s) | 233 |
| PspN4I | GGNNCC | 1 cut(s) | 301 |
| PvuI | CGATCG | 1 cut(s) | 233 |
| SaqAI | TTAA | 1 cut(s) | 80 |
| Sau3AI | GATC | 1 cut(s) | 230 |
| SetI | ASST | 4 cut(s) | 34, 80, 183, 315 |
| SgeI | CNNG | 9 cut(s) | 54, 63, 104, 144, 226, 246, 266, 279, 293 |
| Sse9I | AATT | 2 cut(s) | 20, 95 |
| SsiI | CCGC | 2 cut(s) | 156, 198 |
| SspMI | CTAG | 2 cut(s) | 132, 254 |
| TasI | AATT | 2 cut(s) | 20, 95 |
| Tru1I | TTAA | 1 cut(s) | 80 |
| Tru9I | TTAA | 1 cut(s) | 80 |
| TscAI | CASTG | 1 cut(s) | 157 |
| TseFI | GTSAC | 1 cut(s) | 37 |
| Tsp45I | GTSAC | 1 cut(s) | 37 |
| TspDTI | ATGAA | 2 cut(s) | 17, 303 |
| TspRI | CASTG | 1 cut(s) | 157 |
| XapI | RAATTY | 2 cut(s) | 20, 95 |
| XspI | CTAG | 2 cut(s) | 132, 254 |