Rh6AG290600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003482
Physical Location & Seq
Reverse (-)
48748765 .. 48749196
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG290600.1

Sequence Viewer

Length: 432 bp
ATGAAGCCACCGGGTCACCAACACCAGCGGCGCGCCCTTGAGTCGGATCTCGGACTCGGTCCGTTCCTCGCCGCCGAAGAACGGTTGGATCGATATCAACCCAATTGGTTTCACAACCCGAAACGGCTCGTGGCAGGCTCGCACCGCCACATGGTGGGCAATGTTCGCGCCGGCGCTGTCTCCGGCGAGGAAGCAGCGGGAGCAGTCAGCGAGGTCGAGGAGGGAGTCGGGGTTTTGGTCGAGGAATTTGAGGACGTCGAGGCCGTCGTCGTACTAGCAGGGGTAGCCGTGCTCCGGGGAGAGGTGGTAGTTGATGGAGACTACGACGTCGGGGATTTCGCGGGCCAATTTGCGGCAGACGGCTTCGTAGGCGTAGGAGTCGAGGCTGAGAAAGCTGAAGCCACCGCCGTGGAAGAAAACGACGACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.11

Weight (kDa)

4.44

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AatII GACGTC 2 cut(s) 258, 330
AccB7I CCANNNNNTGG 1 cut(s) 154
AccII CGCG 3 cut(s) 33, 168, 341
AciI CCGC 7 cut(s) 28, 72, 145, 197, 341, 353, 405
AclWI GGATC 2 cut(s) 54, 96
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 2 cut(s) 255, 327
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 7 cut(s) 43, 81, 151, 154, 294, 301, 352
AleI CACNNNNGTG 1 cut(s) 407
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 2 cut(s) 184, 312
AlwI GGATC 2 cut(s) 54, 96
AoxI GGCC 2 cut(s) 261, 343
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 245
AscI GGCGCGCC 1 cut(s) 31
AspLEI GCGC 4 cut(s) 33, 35, 170, 176
AspS9I GGNCC 2 cut(s) 59, 343
AsuC2I CCSGG 2 cut(s) 12, 296
AsuHPI GGTGA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 59
BauI CACGAG 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 308
BceAI ACGGC 5 cut(s) 140, 248, 272, 376, 392
BcnI CCSGG 2 cut(s) 12, 296
BcoDI GTCTC 2 cut(s) 184, 312
BfaI CTAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 4 cut(s) 29, 72, 195, 354
BlsI GCNGC 4 cut(s) 30, 73, 196, 355
Bme1390I CCNGG 2 cut(s) 12, 296
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 59, 343
BmrFI CCNGG 2 cut(s) 12, 296
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 12, 296
Bsa29I ATCGAT 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 2 cut(s) 255, 327
BsaJI CCNNGG 2 cut(s) 295, 408
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 291, 321
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 81, 151, 154, 294, 301, 352
Bse118I RCCGGY 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 295, 408
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 7 cut(s) 43, 81, 151, 154, 294, 301, 352
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 378
BsePI GCGCGC 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 3 cut(s) 33, 168, 341
BshFI GGCC 2 cut(s) 263, 345
BshVI ATCGAT 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 4 cut(s) 11, 171, 183, 295
BslI CCNNNNNNNGG 7 cut(s) 43, 81, 151, 154, 294, 301, 352
BsmAI GTCTC 2 cut(s) 184, 312
BsnI GGCC 2 cut(s) 263, 345
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 2 cut(s) 46, 88
BspACI CCGC 7 cut(s) 28, 72, 145, 197, 341, 353, 405
BspANI GGCC 2 cut(s) 263, 345
BspCNI CTCAG 1 cut(s) 379
BspDI ATCGAT 1 cut(s) 91
BspFNI CGCG 3 cut(s) 33, 168, 341
BspPI GGATC 2 cut(s) 54, 96
BsrDI GCAATG 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 295, 408
BssHII GCGCGC 1 cut(s) 31
BssMI GATC 2 cut(s) 46, 88
BssNI GRCGYC 2 cut(s) 255, 327
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 84
BstACI GRCGYC 2 cut(s) 255, 327
BstC8I GCNNGC 5 cut(s) 33, 136, 140, 172, 343
BstDEI CTNAG 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 408
BstEII GGTNACC 1 cut(s) 14
BstFNI CGCG 3 cut(s) 33, 168, 341
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 4 cut(s) 33, 35, 170, 176
BstKTI GATC 2 cut(s) 49, 91
BstMAI GTCTC 2 cut(s) 184, 312
BstMBI GATC 2 cut(s) 46, 88
BstMWI GCNNNNNNNGC 6 cut(s) 144, 165, 200, 284, 369, 392
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 10, 294
BstUI CGCG 3 cut(s) 33, 168, 341
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 409
BstYI RGATCY 1 cut(s) 46
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 2 cut(s) 263, 345
BsuTUI ATCGAT 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 408
Cac8I GCNNGC 5 cut(s) 33, 136, 140, 172, 343
CfoI GCGC 4 cut(s) 33, 35, 170, 176
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 59, 343
ClaI ATCGAT 1 cut(s) 91
CpoI CGGWCCG 1 cut(s) 59
Csp6I GTAC 1 cut(s) 272
CspI CGGWCCG 1 cut(s) 59
CviAII CATG 1 cut(s) 151
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 387
DpnI GATC 2 cut(s) 48, 90
DpnII GATC 2 cut(s) 46, 88
DraIII CACNNNGTG 1 cut(s) 154
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eco32I GATATC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 14
EcoO65I GGTNACC 1 cut(s) 14
EcoRV GATATC 1 cut(s) 95
FaeI CATG 1 cut(s) 154
FaiI YATR 1 cut(s) 152
FatI CATG 1 cut(s) 150
FauI CCCGC 2 cut(s) 190, 334
Fnu4HI GCNGC 4 cut(s) 29, 72, 195, 354
Fsp4HI GCNGC 4 cut(s) 29, 72, 195, 354
FspBI CTAG 1 cut(s) 275
GlaI GCGC 4 cut(s) 32, 34, 169, 175
GluI GCNGC 4 cut(s) 29, 72, 195, 354
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 2 cut(s) 263, 345
HapII CCGG 4 cut(s) 11, 171, 183, 295
HhaI GCGC 4 cut(s) 33, 35, 170, 176
Hin1I GRCGYC 2 cut(s) 255, 327
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 4 cut(s) 31, 33, 168, 174
HinP1I GCGC 4 cut(s) 31, 33, 168, 174
HinfI GANTC 4 cut(s) 41, 54, 225, 378
HpaII CCGG 4 cut(s) 11, 171, 183, 295
HphI GGTGA 1 cut(s) 8
Hpy188I TCNGA 2 cut(s) 46, 53
Hpy99I CGWCG 7 cut(s) 260, 269, 272, 329, 332, 425, 428
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 2 cut(s) 255, 327
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 165, 200, 284, 369, 392
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 2 cut(s) 255, 327
Hsp92I GRCGYC 2 cut(s) 255, 327
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 4 cut(s) 31, 33, 168, 174
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 46, 88
LmnI GCTCC 2 cut(s) 200, 297
LpnPI CCDG 7 cut(s) 24, 38, 120, 184, 196, 264, 308
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 1 cut(s) 275
MaeII ACGT 2 cut(s) 255, 327
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 48, 90
MboI GATC 2 cut(s) 46, 88
MboII GAAGA 2 cut(s) 89, 425
MfeI CAATTG 1 cut(s) 103
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 3 cut(s) 103, 245, 347
MlyI GAGTC 4 cut(s) 48, 50, 234, 387
MmeI TCCRAC 2 cut(s) 24, 66
MreI CGCCGGCG 1 cut(s) 170
MroNI GCCGGC 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 407
MspA1I CMGCKG 2 cut(s) 28, 197
MspI CCGG 4 cut(s) 11, 171, 183, 295
MspR9I CCNGG 2 cut(s) 12, 296
MunI CAATTG 1 cut(s) 103
MvnI CGCG 3 cut(s) 33, 168, 341
MwoI GCNNNNNNNGC 6 cut(s) 144, 165, 200, 284, 369, 392
NaeI GCCGGC 1 cut(s) 172
NciI CCSGG 2 cut(s) 12, 296
NdeII GATC 2 cut(s) 46, 88
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 14
OliI CACNNNNGTG 1 cut(s) 407
PalAI GGCGCGCC 1 cut(s) 31
PauI GCGCGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 3 cut(s) 88, 261, 264
PdiI GCCGGC 1 cut(s) 172
PflFI GACNNNGTC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 154
PkrI GCNGC 4 cut(s) 30, 73, 196, 355
PleI GAGTC 4 cut(s) 48, 49, 233, 386
PpsI GAGTC 4 cut(s) 48, 49, 233, 386
PspEI GGTNACC 1 cut(s) 14
PspPI GGNCC 2 cut(s) 59, 343
PsuI RGATCY 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 57
PteI GCGCGC 1 cut(s) 31
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 407
Rsr2I CGGWCCG 1 cut(s) 59
RsrII CGGWCCG 1 cut(s) 59
SatI GCNGC 4 cut(s) 29, 72, 195, 354
Sau3AI GATC 2 cut(s) 46, 88
Sau96I GGNCC 2 cut(s) 59, 343
SchI GAGTC 4 cut(s) 48, 50, 234, 387
ScrFI CCNGG 2 cut(s) 12, 296
SduI GDGCHC 1 cut(s) 294
SetI ASST 5 cut(s) 216, 258, 306, 330, 397
SgrAI CRCCGGYG 1 cut(s) 170
SgsI GGCGCGCC 1 cut(s) 31
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 3 cut(s) 103, 245, 347
SsiI CCGC 7 cut(s) 28, 72, 145, 197, 341, 353, 405
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 10, 294
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 2 cut(s) 258, 330
TaqI TCGA 5 cut(s) 91, 216, 240, 258, 381
TaqII GACCGA 1 cut(s) 47
TasI AATT 3 cut(s) 103, 245, 347
TauI GCSGC 3 cut(s) 31, 74, 356
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 51
Tth111I GACNNNGTC 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 245
XspI CTAG 1 cut(s) 275
ZraI GACGTC 2 cut(s) 256, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.