Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Forward (+)

28635981 .. 28636754

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG266100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTGTCTCCTCAAGCTTTCCTACAACACCAAGCTTCTGATGCAGAGCGACCTGGACAAGCTCGCCGCTAAGTTATATTTCCACGCCGGAAGCTTCTCGGAGATCTACAAATCAAGCTTCCTATCTGAGGAAGGAGCCATTTTCGTCGAAATGAAGTGTGTGAATAATGAATTCGGTGTTGGTATTGTGACGGGGACAACCATTCATTGTGTTCTTTGTTGTGAAAGCAAAGGTAGTAGCTCAAAGAGCAATCTTGAATTCGTTTGTCTGAGTTTTGATCTGCAAAATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

97

Amino Acids

10.76

Weight (kDa)

6.06

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7032	PF23005	5 - 39	2.7e-07	Domain of unknown function (DUF7032)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	170, 257
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	6 cut(s)	16, 34, 61, 93, 117, 240
AluI	AGCT	6 cut(s)	16, 34, 61, 93, 117, 240
Alw26I	GTCTC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	170, 257
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	117, 260
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	102, 277
BspACI	CCGC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	118, 261
BspLI	GGNNCC	1 cut(s)	136
BssMI	GATC	2 cut(s)	102, 277
Bst2UI	CCWGG	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	3 cut(s)	69, 126, 269
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	105, 280
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	2 cut(s)	102, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 246
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	63
CviJI	RGCY	7 cut(s)	16, 34, 61, 93, 117, 137, 240
CviKI_1	RGCY	7 cut(s)	16, 34, 61, 93, 117, 137, 240
DdeI	CTNAG	3 cut(s)	69, 126, 269
DpnI	GATC	2 cut(s)	104, 279
DpnII	GATC	2 cut(s)	102, 277
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRI	GAATTC	2 cut(s)	170, 257
EcoRII	CCWGG	1 cut(s)	51
FaiI	YATR	1 cut(s)	76
FaqI	GGGAC	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HapII	CCGG	1 cut(s)	87
HindIII	AAGCTT	4 cut(s)	14, 32, 91, 115
HpaII	CCGG	1 cut(s)	87
Hpy188I	TCNGA	4 cut(s)	39, 100, 127, 270
Hpy188III	TCNNGA	1 cut(s)	254
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	43, 283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 246
HpyF3I	CTNAG	3 cut(s)	69, 126, 269
Kzo9I	GATC	2 cut(s)	102, 277
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	3 cut(s)	38, 65, 100
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	104, 279
MboI	GATC	2 cut(s)	102, 277
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	2 cut(s)	170, 257
MnlI	CCTC	2 cut(s)	20, 121
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	40, 246
NdeII	GATC	2 cut(s)	102, 277
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	102
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	102, 277
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	8 cut(s)	18, 36, 54, 63, 95, 119, 235, 242
SfaNI	GCATC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	170, 257
SsiI	CCGC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	51
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	170, 257
TauI	GCSGC	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	167, 183, 194
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	2 cut(s)	170, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.