Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Reverse (-)

9112684 .. 9119660

Gene Structure 6977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTGGCGCGGTTGTGTTGCTCCGGGTTAGGGCCTCTCATTCTCGGGGTTCTATGTTTCTTGCCGAAAATCTCAAGGGGAAGAGCGGCTCCGGACACCGAGGCCGGTGGAGGCGAGCCCGAAGGTAGTGCCAATAGATTCAACGCGGGCGGCGGCAAAGGGTGGTTGGGGTGCCCTGCTTCTTGGGTGTCTTTAGTAATTGGGTCTAGGCTCACAGTTGGGCCTGGTTCTCAAGTCCTCTGGGTTTGGGTTATTGAGTTGGATCTCATAGAACCACCTCACAGGAATCGACCCACCTCGCTGCCAGTTAATGGGTTCTCTCCAAAACCAGTGAGACAACCACAATGGGGGAAGAAGAGCAGAGCGAGCAATCAAGGCAAAGAACCGGACCAACCCTCCGCCGTCGGAGAATCAAGTCTCCGGCACGGGGATGTTTTGTTGGAATTTGGACTTTTGGACCGCGGATCGGGGGATCCTGCTCCAAATGAGTTTAAGGTTGGGGGTCGATCTGGGAATAGTGCGACCGGTGACAAAGGTGCATCGGGCAAGTGGATTACGAACTTGAGATCCGAAGGCAAGGGTTTGCTGCGGGCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

20.81

Weight (kDa)

9.58

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	171
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	86
AccII	CGCG	3 cut(s)	10, 146, 462
AccIII	TCCGGA	1 cut(s)	91
AclWI	GGATC	5 cut(s)	270, 467, 472, 480, 561
AcsI	RAATTY	1 cut(s)	443
AfiI	CCNNNNNNNGG	5 cut(s)	30, 311, 347, 427, 466
AgeI	ACCGGT	1 cut(s)	524
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	223
AloI	GAACNNNNNNTCC	2 cut(s)	551, 583
Alw26I	GTCTC	2 cut(s)	328, 422
AlwI	GGATC	5 cut(s)	270, 467, 472, 480, 561
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	3 cut(s)	32, 102, 221
ApeKI	GCWGC	2 cut(s)	301, 586
ApoI	RAATTY	1 cut(s)	443
AsiGI	ACCGGT	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	4 cut(s)	32, 221, 388, 457
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	388, 457
BaeGI	GKGCMC	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	288, 573
BceAI	ACGGC	1 cut(s)	386
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	328, 422
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	5 cut(s)	87, 151, 154, 302, 587
BlsI	GCNGC	5 cut(s)	88, 152, 155, 303, 588
Bme1390I	CCNGG	2 cut(s)	25, 225
Bme18I	GGWCC	2 cut(s)	388, 457
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	4 cut(s)	32, 221, 388, 457
BmiI	GGNNCC	3 cut(s)	90, 173, 474
BmrFI	CCNGG	2 cut(s)	25, 225
BmsI	GCATC	1 cut(s)	548
BpuEI	CTTGAG	3 cut(s)	58, 216, 583
BpuMI	CCSGG	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	99, 460
BsaWI	WCCGGW	3 cut(s)	91, 385, 524
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 311, 347, 427, 466
Bse118I	RCCGGY	2 cut(s)	104, 524
Bse1I	ACTGG	2 cut(s)	305, 329
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	99, 460
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	5 cut(s)	30, 311, 347, 427, 466
BseNI	ACTGG	2 cut(s)	305, 329
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	288, 573
Bsh1236I	CGCG	3 cut(s)	10, 146, 462
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	3 cut(s)	34, 104, 223
BshNI	GGYRCC	1 cut(s)	171
BshTI	ACCGGT	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	6 cut(s)	24, 92, 105, 386, 421, 525
BslI	CCNNNNNNNGG	5 cut(s)	30, 311, 347, 427, 466
BsmAI	GTCTC	2 cut(s)	328, 422
BsnI	GGCC	3 cut(s)	34, 104, 223
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	120, 176
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	5 cut(s)	262, 464, 472, 506, 566
BspANI	GGCC	3 cut(s)	34, 104, 223
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	3 cut(s)	10, 146, 462
BspLI	GGNNCC	3 cut(s)	90, 173, 474
BspPI	GGATC	5 cut(s)	270, 467, 472, 480, 561
BspQI	GCTCTTC	2 cut(s)	76, 350
BspT107I	GGYRCC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	86
BsrFI	RCCGGY	2 cut(s)	104, 524
BsrI	ACTGG	2 cut(s)	305, 329
BssAI	RCCGGY	2 cut(s)	104, 524
BssECI	CCNNGG	2 cut(s)	99, 460
BssMI	GATC	5 cut(s)	262, 464, 472, 506, 566
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	76, 350
BstC8I	GCNNGC	4 cut(s)	116, 148, 367, 591
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	3 cut(s)	10, 146, 462
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	5 cut(s)	265, 467, 475, 509, 569
BstMAI	GTCTC	2 cut(s)	328, 422
BstMBI	GATC	5 cut(s)	262, 464, 472, 506, 566
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 375
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	23, 223
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	3 cut(s)	10, 146, 462
BstV1I	GCAGC	2 cut(s)	288, 573
BstX2I	RGATCY	3 cut(s)	262, 472, 566
BstYI	RGATCY	3 cut(s)	262, 472, 566
BsuRI	GGCC	3 cut(s)	34, 104, 223
BtgI	CCRYGG	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	4 cut(s)	116, 148, 367, 591
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	2 cut(s)	104, 524
Cfr13I	GGNCC	4 cut(s)	32, 221, 388, 457
Cfr42I	CCGCGG	1 cut(s)	463
CspAI	ACCGGT	1 cut(s)	524
CviJI	RGCY	6 cut(s)	34, 89, 104, 118, 211, 223
CviKI_1	RGCY	6 cut(s)	34, 89, 104, 118, 211, 223
DpnI	GATC	5 cut(s)	264, 466, 474, 508, 568
DpnII	GATC	5 cut(s)	262, 464, 472, 506, 566
Eam1104I	CTCTTC	2 cut(s)	76, 350
EarI	CTCTTC	2 cut(s)	76, 350
EciI	GGCGGA	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	388, 457
Eco88I	CYCGRG	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	120
FaiI	YATR	2 cut(s)	55, 269
FauI	CCCGC	2 cut(s)	139, 582
Fnu4HI	GCNGC	5 cut(s)	87, 151, 154, 302, 587
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	5 cut(s)	87, 151, 154, 302, 587
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	5 cut(s)	87, 151, 154, 302, 587
HaeIII	GGCC	3 cut(s)	34, 104, 223
HapII	CCGG	6 cut(s)	24, 92, 105, 386, 421, 525
HhaI	GCGC	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	138, 286, 410
HpaII	CCGG	6 cut(s)	24, 92, 105, 386, 421, 525
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	2 cut(s)	407, 571
Hpy188III	TCNNGA	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	2 cut(s)	116, 566
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 375
HspAI	GCGC	1 cut(s)	8
Kpn2I	TCCGGA	1 cut(s)	91
KspI	CCGCGG	1 cut(s)	463
Kzo9I	GATC	5 cut(s)	262, 464, 472, 506, 566
LguI	GCTCTTC	2 cut(s)	76, 350
LmnI	GCTCC	3 cut(s)	26, 94, 484
Lsp1109I	GCAGC	2 cut(s)	288, 573
LweI	GCATC	1 cut(s)	548
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	5 cut(s)	264, 466, 474, 508, 568
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	5 cut(s)	262, 464, 472, 506, 566
MboII	GAAGA	3 cut(s)	93, 364, 367
MflI	RGATCY	3 cut(s)	262, 472, 566
MhlI	GDGCHC	2 cut(s)	120, 176
MluCI	AATT	2 cut(s)	198, 443
MmeI	TCCRAC	3 cut(s)	240, 385, 420
MnlI	CCTC	7 cut(s)	45, 94, 104, 248, 288, 307, 406
MroI	TCCGGA	1 cut(s)	91
MseI	TTAA	2 cut(s)	309, 492
MslI	CAYNNNNRTG	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	462
MspI	CCGG	6 cut(s)	24, 92, 105, 386, 421, 525
MspR9I	CCNGG	2 cut(s)	25, 225
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	3 cut(s)	10, 146, 462
MwoI	GCNNNNNNNGC	2 cut(s)	366, 375
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	5 cut(s)	262, 464, 472, 506, 566
NlaIV	GGNNCC	3 cut(s)	90, 173, 474
NmuCI	GTSAC	1 cut(s)	527
PciSI	GCTCTTC	2 cut(s)	76, 350
PfeI	GAWTC	3 cut(s)	138, 286, 410
PflMI	CCANNNNNTGG	1 cut(s)	311
PinAI	ACCGGT	1 cut(s)	524
PkrI	GCNGC	5 cut(s)	88, 152, 155, 303, 588
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	90, 173, 474
PspPI	GGNCC	4 cut(s)	32, 221, 388, 457
PsuI	RGATCY	3 cut(s)	262, 472, 566
RseI	CAYNNNNRTG	1 cut(s)	429
SacII	CCGCGG	1 cut(s)	463
SapI	GCTCTTC	2 cut(s)	76, 350
SaqAI	TTAA	2 cut(s)	309, 492
SatI	GCNGC	5 cut(s)	87, 151, 154, 302, 587
Sau3AI	GATC	5 cut(s)	262, 464, 472, 506, 566
Sau96I	GGNCC	4 cut(s)	32, 221, 388, 457
ScrFI	CCNGG	2 cut(s)	25, 225
SduI	GDGCHC	2 cut(s)	120, 176
SetI	ASST	5 cut(s)	127, 280, 299, 498, 538
SfaNI	GCATC	1 cut(s)	548
Sfr303I	CCGCGG	1 cut(s)	463
SgrBI	CCGCGG	1 cut(s)	463
SinI	GGWCC	2 cut(s)	388, 457
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	3 cut(s)	73, 231, 562
SmoI	CTYRAG	3 cut(s)	73, 231, 562
Sse9I	AATT	2 cut(s)	198, 443
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	23, 223
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	289, 505
TasI	AATT	2 cut(s)	198, 443
TauI	GCSGC	3 cut(s)	89, 153, 156
TfiI	GAWTC	3 cut(s)	138, 286, 410
Tru1I	TTAA	2 cut(s)	309, 492
Tru9I	TTAA	2 cut(s)	309, 492
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	2 cut(s)	301, 586
Tsp45I	GTSAC	1 cut(s)	527
TspRI	CASTG	1 cut(s)	336
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	388, 457
XapI	RAATTY	1 cut(s)	443
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.