Rh6BG483100

Armadillo/beta-catenin-like repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003482
Physical Location & Seq
Reverse (-)
68827218 .. 68827604
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG483100.1

Sequence Viewer

Length: 387 bp
ATGGGGGAAGAAGAGCAGAGCAGCAGTCAAGGCAAAGAACCAGACCAACCCTCCGCCGCCGGAGAATCAAGTCTCCAACAAGCCATTCAGTCCATCTTGTCCCTCATCTCCCTCACCTACTCCATCAAAATCTTCACCAGAAAATGGAAAACCATAACAACCAAGCTTGAAGAACTCAACTCCGACCTCGCCGCCGTCGAAAAATCTGACGGAGATGAAAACCCAGTTCTCTCCGACATTCTGTCAAAGACTTTAGGTACCATTAACGAGTGCCACGATCTTGCTCGCCGCTGCGTCGATCTTTCCTACTTCGGCAAGCTTCTGATGCAGAGCGACCTTGACAAGCTCGCCGCCAAGCTCGATCTCCACGCCGGAAGCCTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

128

Amino Acids

13.96

Weight (kDa)

4.74

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 27 - 127 4.7e-32 Domain of unknown function (DUF7032)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 5 cut(s) 54, 57, 192, 289, 351
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 170
AhdI GACNNNNNGTC 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
AluBI AGCT 4 cut(s) 166, 319, 346, 358
AluI AGCT 4 cut(s) 166, 319, 346, 358
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 21, 291
Asp718I GGTACC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 106, 127
BanI GGYRCC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 33, 278
BccI CCATC 2 cut(s) 101, 131
BceAI ACGGC 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 6 cut(s) 22, 57, 192, 289, 292, 351
BlsI GCNGC 6 cut(s) 23, 58, 193, 290, 293, 352
BmeRI GACNNNNNGTC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 259
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 33, 278
BshNI GGYRCC 1 cut(s) 257
BsiSI CCGG 2 cut(s) 60, 372
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 85
Bsp143I GATC 3 cut(s) 277, 298, 361
BspACI CCGC 5 cut(s) 54, 57, 192, 289, 351
BspLI GGNNCC 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 224
BssMI GATC 3 cut(s) 277, 298, 361
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 3 cut(s) 286, 317, 348
BstKTI GATC 3 cut(s) 280, 301, 364
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 277, 298, 361
BstMWI GCNNNNNNNGC 2 cut(s) 30, 325
BstV1I GCAGC 2 cut(s) 33, 278
Cac8I GCNNGC 3 cut(s) 286, 317, 348
CseI GACGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 258
CviJI RGCY 6 cut(s) 83, 166, 319, 346, 358, 378
CviKI_1 RGCY 6 cut(s) 83, 166, 319, 346, 358, 378
CviQI GTAC 1 cut(s) 258
DpnI GATC 3 cut(s) 279, 300, 363
DpnII GATC 3 cut(s) 277, 298, 361
DriI GACNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 6
Eam1105I GACNNNNNGTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 1 cut(s) 43
FaiI YATR 2 cut(s) 155, 385
FaqI GGGAC 1 cut(s) 85
Fnu4HI GCNGC 6 cut(s) 22, 57, 192, 289, 292, 351
Fsp4HI GCNGC 6 cut(s) 22, 57, 192, 289, 292, 351
GluI GCNGC 6 cut(s) 22, 57, 192, 289, 292, 351
HapII CCGG 2 cut(s) 60, 372
HgaI GACGC 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 164, 317
HinfI GANTC 1 cut(s) 65
HpaII CCGG 2 cut(s) 60, 372
HphI GGTGA 2 cut(s) 106, 127
Hpy188I TCNGA 4 cut(s) 184, 208, 235, 324
Hpy99I CGWCG 2 cut(s) 200, 299
HpyCH4V TGCA 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 325
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 3 cut(s) 277, 298, 361
LguI GCTCTTC 1 cut(s) 6
LpnPI CCDG 4 cut(s) 54, 73, 151, 237
Lsp1109I GCAGC 2 cut(s) 33, 278
LweI GCATC 1 cut(s) 315
MalI GATC 3 cut(s) 279, 300, 363
MboI GATC 3 cut(s) 277, 298, 361
MboII GAAGA 4 cut(s) 20, 23, 124, 182
MmeI TCCRAC 3 cut(s) 100, 207, 258
MnlI CCTC 4 cut(s) 61, 113, 122, 197
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 291
MspI CCGG 2 cut(s) 60, 372
MwoI GCNNNNNNNGC 2 cut(s) 30, 325
NdeII GATC 3 cut(s) 277, 298, 361
NlaIV GGNNCC 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 273
PfeI GAWTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 6 cut(s) 23, 58, 193, 290, 293, 352
PspN4I GGNNCC 1 cut(s) 259
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 6 cut(s) 22, 57, 192, 289, 292, 351
Sau3AI GATC 3 cut(s) 277, 298, 361
SetI ASST 8 cut(s) 119, 168, 189, 259, 321, 339, 348, 360
SfaNI GCATC 1 cut(s) 315
SsiI CCGC 5 cut(s) 54, 57, 192, 289, 351
TaqI TCGA 3 cut(s) 198, 297, 360
TauI GCSGC 4 cut(s) 59, 194, 291, 353
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 2 cut(s) 21, 291
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.