Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Forward (+)

7682333 .. 7682900

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG047500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTGGATTGACGTATTAGTGAAGCAGTGGGGCTGGGATTGTTGTGTTGGGAAGAAGAAGAAGAGTGGTGGAGTTGGGTTTAGGTTTTGCGAGCTGGGATTGGTGCTCTGGCCACTGGATTTAGGGCTCCTCCGGCGCGGCGCCGATCTGCTCTACACCGCCTCCCAAGCCTCCCACCAATGGACGAGTTTCGACGATCGAGAGAGCTTTCTCTTTGATTTGGAGCTTTCTCTTTGCTCTTCTTCTGCAATTTTAGTTTCAAGATTTACATTGCTCGATTCAGTGGCTGGGTCCAAGAAGAGTTCTATCAAGCCTAATTTTCTAGGCTTTTGTCTTTCATTTTCCATGTTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.23

Weight (kDa)

8.32

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccII	CGCG	1 cut(s)	138
AciI	CCGC	2 cut(s)	138, 159
AcoI	YGGCCR	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	261
AluBI	AGCT	3 cut(s)	94, 207, 226
AluI	AGCT	3 cut(s)	94, 207, 226
Alw21I	GWGCWC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	110
AspLEI	GCGC	2 cut(s)	138, 143
AspS9I	GGNCC	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	323, 355
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	3 cut(s)	128, 142, 292
BsaHI	GRCGYC	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	119
BseYI	CCCAGC	3 cut(s)	33, 94, 287
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	180
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	108, 129
Bsp143I	GATC	2 cut(s)	145, 196
BspACI	CCGC	2 cut(s)	138, 159
BspANI	GGCC	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	3 cut(s)	128, 142, 292
BspQI	GCTCTTC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	145, 196
BssNI	GRCGYC	1 cut(s)	141
Bst6I	CTCTTC	3 cut(s)	56, 244, 293
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	138, 143
BstKTI	GATC	2 cut(s)	148, 199
BstMBI	GATC	2 cut(s)	145, 196
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 167
BstUI	CGCG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	32, 113, 288
Cac8I	GCNNGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	2 cut(s)	138, 143
Cfr13I	GGNCC	1 cut(s)	291
CviAII	CATG	1 cut(s)	346
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	2 cut(s)	147, 198
DpnII	GATC	2 cut(s)	145, 196
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	3 cut(s)	56, 244, 293
EarI	CTCTTC	3 cut(s)	56, 244, 293
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	129
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
FaeI	CATG	1 cut(s)	349
FaiI	YATR	1 cut(s)	347
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	2 cut(s)	323, 355
GlaI	GCGC	2 cut(s)	137, 142
GluI	GCNGC	1 cut(s)	139
GsaI	CCCAGC	3 cut(s)	37, 98, 291
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	1 cut(s)	133
HhaI	GCGC	2 cut(s)	138, 143
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	2 cut(s)	136, 141
HinP1I	GCGC	2 cut(s)	136, 141
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	200, 261
Hpy99I	CGWCG	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 167
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	2 cut(s)	136, 141
KasI	GGCGCC	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	145, 196
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	132, 223
LpnPI	CCDG	6 cut(s)	19, 80, 94, 101, 146, 273
MaeI	CTAG	2 cut(s)	323, 355
MaeII	ACGT	1 cut(s)	12
MalI	GATC	2 cut(s)	147, 198
MboI	GATC	2 cut(s)	145, 196
MboII	GAAGA	7 cut(s)	64, 67, 70, 73, 231, 234, 310
MhlI	GDGCHC	2 cut(s)	108, 129
MlsI	TGGCCA	1 cut(s)	112
MluCI	AATT	2 cut(s)	249, 316
MluNI	TGGCCA	1 cut(s)	112
Mly113I	GGCGCC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	140, 172, 181
Mox20I	TGGCCA	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	112
Msp20I	TGGCCA	1 cut(s)	112
MspI	CCGG	1 cut(s)	133
MteI	GCGCNGCGC	1 cut(s)	139
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	133, 167
NarI	GGCGCC	1 cut(s)	141
NdeII	GATC	2 cut(s)	145, 196
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	128, 142, 292
PciSI	GCTCTTC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	140
Ple19I	CGATCG	1 cut(s)	199
PluTI	GGCGCC	1 cut(s)	144
PspFI	CCCAGC	3 cut(s)	33, 94, 287
PspN4I	GGNNCC	3 cut(s)	128, 142, 292
PspPI	GGNCC	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	244
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	2 cut(s)	145, 196
Sau96I	GGNCC	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	108, 129
SetI	ASST	5 cut(s)	15, 86, 96, 209, 228
SfoI	GGCGCC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	291
Sse9I	AATT	2 cut(s)	249, 316
SsiI	CCGC	2 cut(s)	138, 159
SspDI	GGCGCC	1 cut(s)	140
SspMI	CTAG	2 cut(s)	323, 355
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	192, 199, 276
TasI	AATT	2 cut(s)	249, 316
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	3 cut(s)	32, 120, 288
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	3 cut(s)	32, 120, 288
VpaK11BI	GGWCC	1 cut(s)	291
XspI	CTAG	2 cut(s)	323, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.