Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Reverse (-)

38053486 .. 38053833

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG226900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTGCACCACATTCTCTTTCCTAACGGTGAACAAATTGTCGATGACAATCACATCGTTCTCTCTAGAGAGAAACTTATCGACGAGGTGAGACCCAATGAAGCCGGCACCACCGGTGACGAAGATCCTGAGCTTGTGCTTGCCGAGGCTGGCGGAGACCCTGTCGGAGTTGTGGGGGAGGTCGATGGAGAAGGAGACGGTGTTAATTCGGTAGTGAACAGAGGAGAAGGATCTAGGGATGCAGGGATTGGGCTCGGAAGGGAGAGGCGGGAAAGAGTGGGCTGGAGGATGAAGAAGGTGGAGCCGCCAACGAGGATGAAGAGGAGGTGTTGCTCTTTAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.6

Weight (kDa)

5.22

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	3 cut(s)	153, 268, 305
AclWI	GGATC	2 cut(s)	119, 238
AgeI	ACCGGT	1 cut(s)	113
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	3 cut(s)	85, 150, 189
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	2 cut(s)	119, 238
ApaLI	GTGCAC	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	41, 100, 128
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	85, 150, 189
BfaI	CTAG	2 cut(s)	66, 234
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmiI	GGNNCC	2 cut(s)	109, 303
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	304
Bpu10I	CCTNAGC	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	48
BsaI	GGTCTC	2 cut(s)	85, 150
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 186, 216
Bse118I	RCCGGY	2 cut(s)	104, 113
Bse8I	GATNNNNATC	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	3 cut(s)	244, 294, 321
BseJI	GATNNNNATC	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	2 cut(s)	237, 337
BseSI	GKGCMC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	107
BshTI	ACCGGT	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	105, 114
BsmAI	GTCTC	3 cut(s)	85, 150, 189
BsmBI	CGTCTC	1 cut(s)	189
Bso31I	GGTCTC	2 cut(s)	85, 150
Bsp1286I	GDGCHC	2 cut(s)	9, 255
Bsp143I	GATC	2 cut(s)	124, 230
BspACI	CCGC	3 cut(s)	153, 268, 305
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	109, 303
BspPI	GGATC	2 cut(s)	119, 238
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	2 cut(s)	85, 150
BsrFI	RCCGGY	2 cut(s)	104, 113
BssAI	RCCGGY	2 cut(s)	104, 113
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	124, 230
Bst4CI	ACNGT	2 cut(s)	29, 200
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	106, 141, 151
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	244, 294, 321
BstKTI	GATC	2 cut(s)	127, 233
BstMAI	GTCTC	3 cut(s)	85, 150, 189
BstMBI	GATC	2 cut(s)	124, 230
BstSLI	GKGCMC	1 cut(s)	9
BstX2I	RGATCY	2 cut(s)	124, 230
BstYI	RGATCY	2 cut(s)	124, 230
BtsCI	GGATG	3 cut(s)	244, 294, 321
Cac8I	GCNNGC	3 cut(s)	106, 141, 151
Cfr10I	RCCGGY	2 cut(s)	104, 113
CspAI	ACCGGT	1 cut(s)	113
CviJI	RGCY	6 cut(s)	104, 133, 149, 253, 282, 304
CviKI_1	RGCY	6 cut(s)	104, 133, 149, 253, 282, 304
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	126, 232
DpnII	GATC	2 cut(s)	124, 230
DraI	TTTAAA	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
EciI	GGCGGA	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	2 cut(s)	85, 150
EcoT38I	GRGCYC	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	189
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	3 cut(s)	251, 301, 328
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	2 cut(s)	66, 234
GluI	GCNGC	1 cut(s)	305
GsuI	CTGGAG	1 cut(s)	304
HapII	CCGG	2 cut(s)	105, 114
HpaII	CCGG	2 cut(s)	105, 114
HphI	GGTGA	3 cut(s)	41, 100, 128
Hpy166II	GTNNAC	3 cut(s)	7, 32, 217
Hpy188I	TCNGA	2 cut(s)	167, 257
Hpy188III	TCNNGA	2 cut(s)	66, 128
Hpy8I	GTNNAC	3 cut(s)	7, 32, 217
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	4 cut(s)	185, 221, 252, 289
HpyCH4III	ACNGT	2 cut(s)	29, 200
HpyCH4V	TGCA	2 cut(s)	7, 242
HpyF3I	CTNAG	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	124, 230
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	118, 127, 135, 141, 174, 228, 268
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	66, 234
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	126, 232
MboI	GATC	2 cut(s)	124, 230
MboII	GAAGA	3 cut(s)	134, 304, 331
MflI	RGATCY	2 cut(s)	124, 230
MhlI	GDGCHC	2 cut(s)	9, 255
MluCI	AATT	2 cut(s)	36, 205
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	9 cut(s)	79, 139, 172, 215, 258, 279, 306, 315, 318
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	2 cut(s)	204, 338
MspI	CCGG	2 cut(s)	105, 114
NaeI	GCCGGC	1 cut(s)	106
NdeII	GATC	2 cut(s)	124, 230
NgoMIV	GCCGGC	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	109, 303
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	106
PflFI	GACNNNGTC	1 cut(s)	161
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	109, 303
PsuI	RGATCY	2 cut(s)	124, 230
PsyI	GACNNNGTC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	204, 338
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	124, 230
SduI	GDGCHC	2 cut(s)	9, 255
SetI	ASST	5 cut(s)	90, 135, 183, 300, 329
SfaNI	GCATC	1 cut(s)	229
SgrAI	CRCCGGYG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	36, 205
SsiI	CCGC	3 cut(s)	153, 268, 305
SspMI	CTAG	2 cut(s)	66, 234
TaaI	ACNGT	2 cut(s)	29, 200
TaqI	TCGA	3 cut(s)	42, 81, 183
TasI	AATT	2 cut(s)	36, 205
TauI	GCSGC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	204, 338
Tru9I	TTAA	2 cut(s)	204, 338
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	114, 305, 332
Tth111I	GACNNNGTC	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	5
XbaI	TCTAGA	1 cut(s)	65
XspI	CTAG	2 cut(s)	66, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.