Rh7CG200200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003482
Physical Location & Seq
Reverse (-)
17791271 .. 17791746
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG200200.1

Sequence Viewer

Length: 417 bp
ATGGGGGAAGAAGAGCAGAGTAGCAGTCAAGGCAAAGAACCAAACCAAACCTCCGCCGTCGGAGAATCAGGTCTCCGGCACAGGGATGTTTATGGCTTCGAAATGCAGCAGCAGCCAGAGGACGAGGACGAGGACAAGGACAATTTAATCAAGAAGATGTGGGGCTGGGATTGTTGGGTTGGGAAGAAGAAGAAGAGTGGTGGAGTCGGTTTTGGGCTTTGCAAGCTGAGATTGGTGCTCCGGCCACTGGATTCAGGGCTTCACGAGCTTTGCGGTGTTGATGGTGATGCCATGCGCATGCGTGTGCTCCTCCGGCGCGGCGCCGATCTCGTCGTACTTCTTGGTTTTGTGAGGGATTCTGGTGCTTCTGGGTCCAACTTGGATTTTGTACACTTTTGGGTGTGGTTAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

5.19

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 320
AccII CGCG 1 cut(s) 318
AciI CCGC 3 cut(s) 54, 273, 318
AcoI YGGCCR 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 2 cut(s) 336, 390
AfiI CCNNNNNNNGG 2 cut(s) 82, 247
AluBI AGCT 2 cut(s) 226, 268
AluI AGCT 2 cut(s) 226, 268
Alw21I GWGCWC 2 cut(s) 240, 309
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 3 cut(s) 106, 109, 112
AspLEI GCGC 3 cut(s) 297, 318, 323
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 99
AvaII GGWCC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 320
BauI CACGAG 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 240, 309
BbvI GCAGC 3 cut(s) 118, 121, 124
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 324
BisI GCNGC 4 cut(s) 107, 110, 113, 319
BlsI GCNGC 4 cut(s) 108, 111, 114, 320
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 2 cut(s) 322, 373
BmsI GCATC 1 cut(s) 277
Bpu14I TTCGAA 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 247
Bse1I ACTGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 82, 247
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 118, 121, 124
BseYI CCCAGC 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 244
BshNI GGYRCC 1 cut(s) 320
BsiHKAI GWGCWC 2 cut(s) 240, 309
BsiSI CCGG 3 cut(s) 76, 241, 313
BslI CCNNNNNNNGG 2 cut(s) 82, 247
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 240, 309
Bsp1407I TGTACA 1 cut(s) 388
Bsp143I GATC 2 cut(s) 325, 409
BspACI CCGC 3 cut(s) 54, 273, 318
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 219
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 322, 373
BspQI GCTCTTC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 388
BsrI ACTGG 1 cut(s) 252
BssMI GATC 2 cut(s) 325, 409
BssNI GRCGYC 1 cut(s) 321
BssSI CACGAG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 263
Bst6I CTCTTC 2 cut(s) 6, 188
BstACI GRCGYC 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 388
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 224, 299
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 318
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 3 cut(s) 297, 318, 323
BstKTI GATC 2 cut(s) 328, 412
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 325, 409
BstMWI GCNNNNNNNGC 5 cut(s) 30, 112, 223, 265, 313
BstNSI RCATGY 1 cut(s) 301
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 3 cut(s) 118, 121, 124
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 224, 299
CfoI GCGC 3 cut(s) 297, 318, 323
Cfr13I GGNCC 1 cut(s) 372
Csp6I GTAC 2 cut(s) 335, 389
CviAII CATG 2 cut(s) 292, 298
CviJI RGCY 8 cut(s) 96, 115, 165, 217, 226, 244, 259, 268
CviKI_1 RGCY 8 cut(s) 96, 115, 165, 217, 226, 244, 259, 268
CviQI GTAC 2 cut(s) 335, 389
DdeI CTNAG 1 cut(s) 227
DinI GGCGCC 1 cut(s) 322
DpnI GATC 2 cut(s) 327, 411
DpnII GATC 2 cut(s) 325, 409
EaeI YGGCCR 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 6, 188
EarI CTCTTC 2 cut(s) 6, 188
EciI GGCGGA 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
FaeI CATG 2 cut(s) 295, 301
FaiI YATR 3 cut(s) 93, 293, 299
FatI CATG 2 cut(s) 291, 297
Fnu4HI GCNGC 4 cut(s) 107, 110, 113, 319
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 4 cut(s) 107, 110, 113, 319
FspAI RTGCGCAY 1 cut(s) 296
FspI TGCGCA 1 cut(s) 296
GlaI GCGC 3 cut(s) 296, 317, 322
GluI GCNGC 4 cut(s) 107, 110, 113, 319
GsaI CCCAGC 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 1 cut(s) 244
HapII CCGG 3 cut(s) 76, 241, 313
HhaI GCGC 3 cut(s) 297, 318, 323
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 2 cut(s) 295, 301
Hin6I GCGC 3 cut(s) 295, 316, 321
HinP1I GCGC 3 cut(s) 295, 316, 321
HinfI GANTC 4 cut(s) 65, 204, 251, 356
HpaII CCGG 3 cut(s) 76, 241, 313
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 151, 263
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 2 cut(s) 62, 335
HpyCH4V TGCA 2 cut(s) 106, 222
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 112, 223, 265, 313
HpyF3I CTNAG 1 cut(s) 227
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 2 cut(s) 295, 301
HspAI GCGC 3 cut(s) 295, 316, 321
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 325, 409
LguI GCTCTTC 1 cut(s) 6
LmnI GCTCC 2 cut(s) 243, 312
Lsp1109I GCAGC 3 cut(s) 118, 121, 124
LweI GCATC 1 cut(s) 277
MalI GATC 2 cut(s) 327, 411
MboI GATC 2 cut(s) 325, 409
MboII GAAGA 7 cut(s) 20, 23, 166, 196, 199, 202, 205
MhlI GDGCHC 2 cut(s) 240, 309
MluCI AATT 1 cut(s) 142
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 2 cut(s) 40, 399
MnlI CCTC 6 cut(s) 61, 112, 118, 124, 320, 345
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 3 cut(s) 84, 296, 302
MspI CCGG 3 cut(s) 76, 241, 313
MteI GCGCNGCGC 1 cut(s) 319
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 5 cut(s) 30, 112, 223, 265, 313
NarI GGCGCC 1 cut(s) 321
NdeII GATC 2 cut(s) 325, 409
NlaIII CATG 2 cut(s) 295, 301
NlaIV GGNNCC 2 cut(s) 322, 373
NsbI TGCGCA 1 cut(s) 296
NspI RCATGY 1 cut(s) 301
NspV TTCGAA 1 cut(s) 99
PaeI GCATGC 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 65, 251, 356
PkrI GCNGC 4 cut(s) 108, 111, 114, 320
PleI GAGTC 1 cut(s) 212
PluTI GGCGCC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 322, 373
PspPI GGNCC 1 cut(s) 372
RsaI GTAC 2 cut(s) 336, 390
RsaNI GTAC 2 cut(s) 335, 389
RseI CAYNNNNRTG 3 cut(s) 84, 296, 302
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 4 cut(s) 107, 110, 113, 319
Sau3AI GATC 2 cut(s) 325, 409
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 2 cut(s) 240, 309
SetI ASST 4 cut(s) 53, 73, 228, 270
SfaNI GCATC 1 cut(s) 277
SfoI GGCGCC 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 99
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 3 cut(s) 84, 296, 302
SphI GCATGC 1 cut(s) 301
Sse9I AATT 1 cut(s) 142
SsiI CCGC 3 cut(s) 54, 273, 318
SspDI GGCGCC 1 cut(s) 320
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 142
TatI WGTACW 1 cut(s) 388
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 3 cut(s) 65, 251, 356
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 252
TseI GCWGC 3 cut(s) 106, 109, 112
TspRI CASTG 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 372
XceI RCATGY 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.