RLG00000017996

Armadillo/beta-catenin-like repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003482
Physical Location & Seq
Reverse (-)
24239156 .. 24239748
593 bp
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UTR
Exon/CDS
Intron
RLM00000017996

Sequence Viewer

Length: 480 bp
ATGGGGGAAGAAAAGCAGATTAGCAATCAAGGCAAAGAACCAAACCAACCCTCTGCCGCTGGAGAATCAAGTCTCTGGCAAGTCATTCAGTCTGTCTTTTCCCTCATCTCCCTCACCTACTCCATCAAAATCTTCGCCAAAAAATGGAAAACCATAACAACCAAGCTTGAAGAACTCAACTCCGGCCTTGCCACCATCAAAAGCTTCGACGGAGATGAAAACTCAGTTCTCTTTGGTGTTTTGTCGAAGACTTTAGCTACCATTAACAAGTGCCACGATCTTGCTCTCCGCTGCATTGACCTTTCCTACTCCGGGAAACTTCTGATGCAGAGTGACTTTGACAAGCTCGCCGCCAAGCTCGATCTCCACGCCGGAAGCCTCTCAGAAATCTACAACGCCGGCTTGCTTAGTCACCGTTTGGCCATCATGGAATCGAGTTGGTGGAGGAAAAACATTGATAGCCAAGAGAGGTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

160

Amino Acids

17.83

Weight (kDa)

6.83

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 28 - 134 2.1e-31 Domain of unknown function (DUF7032)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 3 cut(s) 57, 289, 351
AcoI YGGCCR 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 144, 312
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 5 cut(s) 166, 204, 257, 346, 358
AluI AGCT 5 cut(s) 166, 204, 257, 346, 358
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 2 cut(s) 184, 420
ApeKI GCWGC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 106, 404
BalI TGGCCA 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 278
BccI CCATC 3 cut(s) 131, 203, 431
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 3 cut(s) 57, 292, 351
BlsI GCNGC 3 cut(s) 58, 293, 352
Bme1390I CCNGG 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 312
Bse118I RCCGGY 1 cut(s) 398
BseLI CCNNNNNNNGG 2 cut(s) 144, 312
BseMII CTCAG 2 cut(s) 237, 396
BseXI GCAGC 1 cut(s) 278
BshFI GGCC 2 cut(s) 186, 422
BsiSI CCGG 4 cut(s) 183, 312, 372, 399
BslI CCNNNNNNNGG 2 cut(s) 144, 312
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 2 cut(s) 186, 422
Bsp143I GATC 2 cut(s) 277, 361
BspACI CCGC 3 cut(s) 57, 289, 351
BspANI GGCC 2 cut(s) 186, 422
BspCNI CTCAG 2 cut(s) 236, 395
BsrFI RCCGGY 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 398
BssMI GATC 2 cut(s) 277, 361
Bst4CI ACNGT 1 cut(s) 416
BstC8I GCNNGC 3 cut(s) 348, 400, 404
BstDEI CTNAG 3 cut(s) 223, 382, 407
BstKTI GATC 2 cut(s) 280, 364
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 277, 361
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 254
BsuRI GGCC 2 cut(s) 186, 422
Cac8I GCNNGC 3 cut(s) 348, 400, 404
Cfr10I RCCGGY 1 cut(s) 398
CviAII CATG 1 cut(s) 427
DdeI CTNAG 3 cut(s) 223, 382, 407
DpnI GATC 2 cut(s) 279, 363
DpnII GATC 2 cut(s) 277, 361
EaeI YGGCCR 1 cut(s) 420
FaeI CATG 1 cut(s) 430
FaiI YATR 2 cut(s) 155, 428
FatI CATG 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 57, 292, 351
Fsp4HI GCNGC 3 cut(s) 57, 292, 351
GluI GCNGC 3 cut(s) 57, 292, 351
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 186, 422
HapII CCGG 4 cut(s) 183, 312, 372, 399
Hin1II CATG 1 cut(s) 430
HindIII AAGCTT 2 cut(s) 164, 202
HinfI GANTC 2 cut(s) 65, 431
HpaII CCGG 4 cut(s) 183, 312, 372, 399
HphI GGTGA 2 cut(s) 106, 404
Hpy188I TCNGA 2 cut(s) 324, 385
Hpy99I CGWCG 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 294, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 3 cut(s) 223, 382, 407
Hsp92II CATG 1 cut(s) 430
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
Kzo9I GATC 2 cut(s) 277, 361
LpnPI CCDG 6 cut(s) 45, 61, 196, 325, 385, 412
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 332, 410
MalI GATC 2 cut(s) 279, 363
MboI GATC 2 cut(s) 277, 361
MboII GAAGA 4 cut(s) 20, 124, 182, 259
MlsI TGGCCA 1 cut(s) 422
MluNI TGGCCA 1 cut(s) 422
MnlI CCTC 6 cut(s) 61, 113, 122, 389, 438, 462
Mox20I TGGCCA 1 cut(s) 422
MroNI GCCGGC 1 cut(s) 398
MscI TGGCCA 1 cut(s) 422
MseI TTAA 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 422
MspA1I CMGCKG 2 cut(s) 59, 291
MspI CCGG 4 cut(s) 183, 312, 372, 399
MspR9I CCNGG 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 30
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 313
NdeII GATC 2 cut(s) 277, 361
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 1 cut(s) 430
NmuCI GTSAC 2 cut(s) 332, 410
PdiI GCCGGC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 65, 431
PflMI CCANNNNNTGG 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 311
PkrI GCNGC 3 cut(s) 58, 293, 352
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 3 cut(s) 57, 292, 351
Sau3AI GATC 2 cut(s) 277, 361
ScrFI CCNGG 1 cut(s) 313
SetI ASST 8 cut(s) 119, 168, 206, 259, 303, 348, 360, 473
SfaNI GCATC 1 cut(s) 315
SsiI CCGC 3 cut(s) 57, 289, 351
StyD4I CCNGG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 416
TaqI TCGA 4 cut(s) 207, 245, 360, 434
TauI GCSGC 2 cut(s) 59, 353
TfiI GAWTC 2 cut(s) 65, 431
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseFI GTSAC 2 cut(s) 332, 410
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 2 cut(s) 332, 410
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.