RLG00000007824

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003482
Physical Location & Seq
Reverse (-)
21594624 .. 21595689
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007824

Sequence Viewer

Length: 354 bp
ATGTGTCTCCTCAAGCTTTCCTACAGCAGCAAGCTTCTGATGCAGAGCGATCTGGACAAGCTCGCCGCTAAGTTCTATTTCCACACCAGAAGCTTCTCAGAGATCTATAAATCAAGCTTCCTATCTGTTTCTTTAAAATTTTCTGGTGGCGGTGGTGGTGGTGTTGTTGTGGAGGTCAGTGGAGAAGGGGGCGGTGTTGATTCGGTCGTGGATGGAGGAGAAGGATCGGGGGATGGAGGGATTGGGCTAGGAAGAGAAGCAGGAGAGAGTGGGCGGAGGATGAAGAAGGTGGAGCCGATGAGAAGGTATGGGTTTGTGGAGAGTAGGGGAAGACTAGGACGTGAGGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.48

Weight (kDa)

9.13

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 5 - 39 1.1e-07 Domain of unknown function (DUF7032)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 66, 150, 192, 274
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 137
AjiI CACGTC 1 cut(s) 341
AluBI AGCT 5 cut(s) 16, 34, 61, 93, 117
AluI AGCT 5 cut(s) 16, 34, 61, 93, 117
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 39
BccI CCATC 2 cut(s) 206, 227
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 248, 335
BfmI CTRYAG 1 cut(s) 22
BglII AGATCT 1 cut(s) 102
BisI GCNGC 2 cut(s) 28, 66
BlsI GCNGC 2 cut(s) 29, 67
BmgBI CACGTC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 337
BseGI GGATG 3 cut(s) 217, 238, 285
BseMII CTCAG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 11
Bsp143I GATC 3 cut(s) 49, 102, 224
BspACI CCGC 4 cut(s) 66, 150, 192, 274
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 232
BssMI GATC 3 cut(s) 49, 102, 224
Bst6I CTCTTC 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 32, 63
BstDEI CTNAG 2 cut(s) 69, 97
BstF5I GGATG 3 cut(s) 217, 238, 285
BstKTI GATC 3 cut(s) 52, 105, 227
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 49, 102, 224
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BtrI CACGTC 1 cut(s) 341
BtsCI GGATG 3 cut(s) 217, 238, 285
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 32, 63
CviJI RGCY 7 cut(s) 16, 34, 61, 93, 117, 247, 295
CviKI_1 RGCY 7 cut(s) 16, 34, 61, 93, 117, 247, 295
DdeI CTNAG 2 cut(s) 69, 97
DpnI GATC 3 cut(s) 51, 104, 226
DpnII GATC 3 cut(s) 49, 102, 224
DraI TTTAAA 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
EciI GGCGGA 1 cut(s) 289
FaiI YATR 2 cut(s) 108, 309
Fnu4HI GCNGC 2 cut(s) 28, 66
FokI GGATG 3 cut(s) 224, 245, 292
Fsp4HI GCNGC 2 cut(s) 28, 66
FspBI CTAG 2 cut(s) 248, 335
GluI GCNGC 2 cut(s) 28, 66
HindIII AAGCTT 4 cut(s) 14, 32, 91, 115
HinfI GANTC 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 39, 100
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 179, 215, 280, 297
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 2 cut(s) 69, 97
HpySE526I ACGT 1 cut(s) 340
Kzo9I GATC 3 cut(s) 49, 102, 224
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 4 cut(s) 38, 100, 129, 246
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 30
MaeI CTAG 2 cut(s) 248, 335
MaeII ACGT 1 cut(s) 340
MalI GATC 3 cut(s) 51, 104, 226
MboI GATC 3 cut(s) 49, 102, 224
MboII GAAGA 3 cut(s) 264, 295, 342
MflI RGATCY 1 cut(s) 102
MluCI AATT 1 cut(s) 137
MnlI CCTC 7 cut(s) 20, 166, 209, 230, 270, 337, 342
MseI TTAA 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 3 cut(s) 49, 102, 224
NlaIV GGNNCC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 29, 67
PspN4I GGNNCC 1 cut(s) 294
PsuI RGATCY 1 cut(s) 102
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 2 cut(s) 28, 66
Sau3AI GATC 3 cut(s) 49, 102, 224
SfaNI GCATC 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 137
SsiI CCGC 4 cut(s) 66, 150, 192, 274
SspMI CTAG 2 cut(s) 248, 335
TaiI ACGT 1 cut(s) 343
TaqII GACCGA 1 cut(s) 193
TasI AATT 1 cut(s) 137
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 296
TspRI CASTG 1 cut(s) 184
XapI RAATTY 1 cut(s) 137
XspI CTAG 2 cut(s) 248, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.