Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Reverse (-)

17570107 .. 17570583

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGGTCATCACGTTCAAGAACCTCAAGAGGAACTCGACTCTTCTAGGCTTACAGGACCTGAGCGACGATGATCTACGGTCCAAGTTGCAGGAGGGTGATTTCGACGGCCACTGGATTGTTGCGTTGGGAAGAGGAAGAAGAGTGGTGGAGTCGGGTTTTGGGCTTTGCGAGCTGGGATTGGTGCTCCGGCCACTGGATTCGGGGCTTTACGAGCTTTGCGGTGTTGATGGTGATGGCATATGTGCGCTCCTCCGGTGCGACGCTGATCTCGTCGTAGTTCTTGGTTTTGTGAGGGATTCTGGTGCTTTTGGGTCCAACTTGGATTTCGTAACCTTTTTGGGTGTGGTTAAATCAATGAAGAGTTTTAGGTTGTTGAAGAATCCAATTATCAAGGATTTGTTATTATTGTTGATTTATGGTGTTGGAAAGAACTGGATTTGGATCGAAGAGTTGAAATGGATGTACATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

159

Amino Acids

17.68

Weight (kDa)

5.17

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	2 cut(s)	109, 191
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	3 cut(s)	19, 379, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	2 cut(s)	175, 217
AluI	AGCT	2 cut(s)	175, 217
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	109, 191
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	3 cut(s)	58, 81, 315
AsuHPI	GGTGA	2 cut(s)	110, 245
AvaII	GGWCC	3 cut(s)	58, 81, 315
Bbv12I	GWGCWC	1 cut(s)	189
BccI	CCATC	2 cut(s)	224, 230
BceAI	ACGGC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	47
Bme18I	GGWCC	3 cut(s)	58, 81, 315
BmgT120I	GGNCC	3 cut(s)	58, 81, 315
BmiI	GGNNCC	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	3 cut(s)	119, 201, 440
Bse8I	GATNNNNATC	1 cut(s)	443
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	3 cut(s)	119, 201, 440
BseRI	GAGGAG	1 cut(s)	242
BseYI	CCCAGC	1 cut(s)	175
BshFI	GGCC	2 cut(s)	111, 193
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	190, 256
BslI	CCNNNNNNNGG	1 cut(s)	196
BsnI	GGCC	2 cut(s)	111, 193
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	73, 268, 444
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	2 cut(s)	111, 193
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	3 cut(s)	119, 201, 440
BssMI	GATC	3 cut(s)	73, 268, 444
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	5 cut(s)	48, 127, 136, 356, 444
BstAUI	TGTACA	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	3 cut(s)	76, 271, 447
BstMBI	GATC	3 cut(s)	73, 268, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 214
BstNSI	RCATGY	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	111, 193
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	112, 194
Cac8I	GCNNGC	1 cut(s)	173
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	3 cut(s)	58, 81, 315
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	1 cut(s)	469
CviJI	RGCY	7 cut(s)	51, 111, 166, 175, 193, 208, 217
CviKI_1	RGCY	7 cut(s)	51, 111, 166, 175, 193, 208, 217
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	3 cut(s)	75, 270, 446
DpnII	GATC	3 cut(s)	73, 268, 444
EaeI	YGGCCR	2 cut(s)	109, 191
Eam1104I	CTCTTC	5 cut(s)	48, 127, 136, 356, 444
EarI	CTCTTC	5 cut(s)	48, 127, 136, 356, 444
Eco47I	GGWCC	3 cut(s)	58, 81, 315
EcoO109I	RGGNCCY	1 cut(s)	58
FaeI	CATG	1 cut(s)	472
FaiI	YATR	4 cut(s)	242, 244, 420, 470
FatI	CATG	1 cut(s)	468
FauNDI	CATATG	1 cut(s)	242
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	249
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	111, 193
HapII	CCGG	2 cut(s)	190, 256
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	5 cut(s)	40, 152, 200, 299, 382
HpaII	CCGG	2 cut(s)	190, 256
HphI	GGTGA	2 cut(s)	110, 245
Hpy188III	TCNNGA	2 cut(s)	19, 28
Hpy99I	CGWCG	4 cut(s)	71, 110, 266, 278
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 214
HpyF3I	CTNAG	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	3 cut(s)	73, 268, 444
LmnI	GCTCC	2 cut(s)	192, 255
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	3 cut(s)	75, 270, 446
MboI	GATC	3 cut(s)	73, 268, 444
MboII	GAAGA	7 cut(s)	35, 144, 150, 153, 373, 391, 461
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	387
MlyI	GAGTC	2 cut(s)	34, 161
MmeI	TCCRAC	2 cut(s)	342, 406
MnlI	CCTC	6 cut(s)	24, 35, 88, 128, 263, 288
MseI	TTAA	1 cut(s)	351
MspI	CCGG	2 cut(s)	190, 256
MwoI	GCNNNNNNNGC	2 cut(s)	172, 214
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	3 cut(s)	73, 268, 444
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	472
PciI	ACATGT	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	200, 299, 382
PleI	GAGTC	2 cut(s)	34, 160
PpsI	GAGTC	2 cut(s)	34, 160
PpuMI	RGGWCCY	1 cut(s)	58
PscI	ACATGT	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	3 cut(s)	58, 81, 315
PspPPI	RGGWCCY	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	351
Sau3AI	GATC	3 cut(s)	73, 268, 444
Sau96I	GGNCC	3 cut(s)	58, 81, 315
SchI	GAGTC	2 cut(s)	34, 161
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	8 cut(s)	9, 17, 27, 63, 177, 219, 338, 374
SinI	GGWCC	3 cut(s)	58, 81, 315
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	38, 105, 447
TasI	AATT	1 cut(s)	387
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	3 cut(s)	200, 299, 382
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	119, 201
TspDTI	ATGAA	1 cut(s)	374
TspRI	CASTG	2 cut(s)	119, 201
VpaK11BI	GGWCC	3 cut(s)	58, 81, 315
XceI	RCATGY	1 cut(s)	472
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.