Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Reverse (-)

6343168 .. 6343720

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031575

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACGTCAGCCATCGTCTTCCTCTTCAAGTCAATTATGCTTTGTGAACTCTCATGCTCGACGGTTTCGGCAACATCTCTTGGATGTTTATGGCTTCGAAACACAGCATCAGCCGGAGGACTAGGACAAGGACAATTTAATCAAGAAGATAGTCTCTCTAATTCTCTCTTTCTGATTGGAGCTGTGTGGATTGACATATTCATGAAGCAGTGGGGCTGGGATTGTTGCGTTGGGAAGAAGAAGAAGAGTGGTGGAGTCAGGTTTGGGCTTTGCGAGCTGGGATTGGTGCTCTGGCCACTGGATTCAGGGCTTCACGAGCTTCGCGGTGTTGATAGTGATGCCATGCGTGCGCTCCTCCGACACGGCGCCGATCTAGTCTTACTTCTTGGATTTGTGCGGGATTTTGATGCTTCTGGGTACAACTTGGATTTTGTAAACTTTTGGGTATGGTTAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.89

Weight (kDa)

5.22

Isoelectric Point (pI)

21.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	365
AccII	CGCG	1 cut(s)	324
AciI	CCGC	2 cut(s)	324, 397
AcoI	YGGCCR	1 cut(s)	293
AcyI	GRCGYC	2 cut(s)	5, 366
AfaI	GTAC	1 cut(s)	419
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	3 cut(s)	182, 277, 319
AluI	AGCT	3 cut(s)	182, 277, 319
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	293
AspLEI	GCGC	2 cut(s)	352, 368
AsuII	TTCGAA	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	291
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	122, 374
BfoI	RGCGCY	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	367
BmsI	GCATC	3 cut(s)	116, 328, 397
BpiI	GAAGAC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	97
BsaHI	GRCGYC	2 cut(s)	5, 366
Bse1I	ACTGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	344
BseYI	CCCAGC	2 cut(s)	216, 277
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	295
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	370, 454
BspACI	CCGC	2 cut(s)	324, 397
BspANI	GGCC	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	370, 454
BssNI	GRCGYC	2 cut(s)	5, 366
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	2 cut(s)	29, 239
BstACI	GRCGYC	2 cut(s)	5, 366
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	275, 348
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	2 cut(s)	352, 368
BstKTI	GATC	2 cut(s)	373, 457
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	370, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 316, 347
BstUI	CGCG	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	2 cut(s)	215, 296
Cac8I	GCNNGC	2 cut(s)	275, 348
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	2 cut(s)	352, 368
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	3 cut(s)	54, 202, 343
CviQI	GTAC	1 cut(s)	418
DinI	GGCGCC	1 cut(s)	367
DpnI	GATC	2 cut(s)	372, 456
DpnII	GATC	2 cut(s)	370, 454
EaeI	YGGCCR	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	29, 239
EarI	CTCTTC	2 cut(s)	29, 239
EgeI	GGCGCC	1 cut(s)	367
EheI	GGCGCC	1 cut(s)	367
FaeI	CATG	3 cut(s)	57, 205, 346
FaiI	YATR	7 cut(s)	38, 55, 91, 197, 203, 344, 448
FatI	CATG	3 cut(s)	53, 201, 342
FauI	CCCGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	96
FspBI	CTAG	2 cut(s)	122, 374
GlaI	GCGC	2 cut(s)	351, 367
GsaI	CCCAGC	2 cut(s)	220, 281
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	2 cut(s)	352, 368
Hin1I	GRCGYC	2 cut(s)	5, 366
Hin1II	CATG	3 cut(s)	57, 205, 346
Hin6I	GCGC	2 cut(s)	350, 366
HinP1I	GCGC	2 cut(s)	350, 366
HinfI	GANTC	2 cut(s)	255, 302
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	2 cut(s)	47, 436
Hpy188I	TCNGA	2 cut(s)	174, 359
Hpy188III	TCNNGA	3 cut(s)	143, 202, 314
Hpy8I	GTNNAC	2 cut(s)	47, 436
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	5
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 316, 347
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	2 cut(s)	5, 366
Hsp92II	CATG	3 cut(s)	57, 205, 346
HspAI	GCGC	2 cut(s)	350, 366
KasI	GGCGCC	1 cut(s)	365
Kzo9I	GATC	2 cut(s)	370, 454
LmnI	GCTCC	2 cut(s)	179, 357
LpnPI	CCDG	8 cut(s)	127, 202, 244, 263, 277, 284, 291, 399
LweI	GCATC	3 cut(s)	116, 328, 397
MaeI	CTAG	2 cut(s)	122, 374
MaeII	ACGT	1 cut(s)	5
MalI	GATC	2 cut(s)	372, 456
MboI	GATC	2 cut(s)	370, 454
MboII	GAAGA	7 cut(s)	10, 16, 158, 247, 250, 253, 256
MhlI	GDGCHC	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	295
MluCI	AATT	3 cut(s)	33, 134, 160
MluNI	TGGCCA	1 cut(s)	295
Mly113I	GGCGCC	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	3 cut(s)	32, 110, 365
Mox20I	TGGCCA	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	295
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	295
MspI	CCGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	274, 316, 347
NarI	GGCGCC	1 cut(s)	366
NdeII	GATC	2 cut(s)	370, 454
NlaIII	CATG	3 cut(s)	57, 205, 346
NlaIV	GGNNCC	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	97
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	263
PluTI	GGCGCC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	263
PspFI	CCCAGC	2 cut(s)	216, 277
PspN4I	GGNNCC	1 cut(s)	367
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	370, 454
SchI	GAGTC	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	5 cut(s)	8, 184, 263, 279, 321
SfaNI	GCATC	3 cut(s)	116, 328, 397
SfoI	GGCGCC	1 cut(s)	367
SfuI	TTCGAA	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	3 cut(s)	33, 134, 160
SsiI	CCGC	2 cut(s)	324, 397
SspDI	GGCGCC	1 cut(s)	365
SspMI	CTAG	2 cut(s)	122, 374
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	59, 97
TasI	AATT	3 cut(s)	33, 134, 160
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	215, 303
TspDTI	ATGAA	2 cut(s)	190, 218
TspRI	CASTG	2 cut(s)	215, 303
XspI	CTAG	2 cut(s)	122, 374
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.