Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016279.1

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Forward (+)

5613 .. 7587

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016279.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgggggaagaagagcagagcagcagtcaaggcaaagaaccagaccaaccctccgccgccggagaatcaagtctccgacaagccattcagttcatcttgtccctcatctccctcacctactccatcaaaatcttcaccggaaaatggaaaaccataacaaccaagctcaaagaactcaactccagcctcgccgccgtcgaaaactctaacggagatgaaaacccagttctctccggcattctgttgaagactttaggtcctaagattcgctggtcatatgattcacagaggcgagctcgagcggagctgagttatctaaagacattcttcatcagaattttcactctttcacttccaatttcactttatgctctgctgccttttcttcatgtttataatgatccaatcccccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

138

Amino Acids

15.47

Weight (kDa)

8.89

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccBSI	CCGCTC	1 cut(s)	302
AciI	CCGC	4 cut(s)	54, 57, 192, 302
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	247
AhdI	GACNNNNNGTC	1 cut(s)	255
AluBI	AGCT	3 cut(s)	166, 296, 307
AluI	AGCT	3 cut(s)	166, 296, 307
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	395
Ama87I	CYCGRG	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	21, 376
ApoI	RAATTY	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	106, 127
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	33, 363
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	22, 57, 192, 377
BlsI	GCNGC	4 cut(s)	23, 58, 193, 378
Bme18I	GGWCC	1 cut(s)	257
BmeRI	GACNNNNNGTC	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	33, 363
BsiHKAI	GWGCWC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	60, 138, 234
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	4 cut(s)	54, 57, 192, 302
BspCNI	CTCAG	1 cut(s)	300
BspPI	GGATC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	261, 308
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	33, 363
BstV2I	GAAGAC	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	257
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	5 cut(s)	83, 166, 186, 296, 307
CviKI_1	RGCY	5 cut(s)	83, 166, 186, 296, 307
DdeI	CTNAG	2 cut(s)	261, 308
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
DriI	GACNNNNNGTC	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	6
Eam1105I	GACNNNNNGTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	1 cut(s)	392
FaiI	YATR	6 cut(s)	155, 277, 279, 369, 390, 396
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	1 cut(s)	388
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	22, 57, 192, 377
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	22, 57, 192, 377
GluI	GCNGC	4 cut(s)	22, 57, 192, 377
GsuI	CTGGAG	1 cut(s)	166
HapII	CCGG	3 cut(s)	60, 138, 234
Hin1II	CATG	1 cut(s)	392
HinfI	GANTC	3 cut(s)	65, 265, 281
HpaII	CCGG	3 cut(s)	60, 138, 234
HphI	GGTGA	2 cut(s)	106, 127
Hpy188I	TCNGA	2 cut(s)	77, 335
Hpy99I	CGWCG	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	261, 308
Hsp92II	CATG	1 cut(s)	392
Kzo9I	GATC	1 cut(s)	400
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	54, 73, 151, 196, 237, 247, 256
Lsp1109I	GCAGC	2 cut(s)	33, 363
MalI	GATC	1 cut(s)	402
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	1 cut(s)	400
MboII	GAAGA	6 cut(s)	20, 23, 124, 259, 319, 377
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	336, 357
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	61, 113, 122, 197, 282
MspI	CCGG	3 cut(s)	60, 138, 234
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	65, 265, 281
PkrI	GCNGC	4 cut(s)	23, 58, 193, 378
PpuMI	RGGWCCY	1 cut(s)	257
PsiI	TTATAA	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	257
PspPPI	RGGWCCY	1 cut(s)	257
PspXI	VCTCGAGB	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	6
SatI	GCNGC	4 cut(s)	22, 57, 192, 377
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	5 cut(s)	119, 168, 259, 298, 309
Sfr274I	CTCGAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	336, 357
SsiI	CCGC	4 cut(s)	54, 57, 192, 302
SstI	GAGCTC	1 cut(s)	298
TaqI	TCGA	2 cut(s)	198, 298
TasI	AATT	2 cut(s)	336, 357
TauI	GCSGC	2 cut(s)	59, 194
TfiI	GAWTC	3 cut(s)	65, 265, 281
TseI	GCWGC	2 cut(s)	21, 376
TspDTI	ATGAA	4 cut(s)	82, 231, 319, 377
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	336
XhoI	CTCGAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.