RLG00000008707

Armadillo/beta-catenin-like repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003482
Physical Location & Seq
Reverse (-)
35483395 .. 35484677
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008707

Sequence Viewer

Length: 321 bp
ATGTGTCTCCTCAAGCTTTCCTACAGCAGCAAGCTTTTGATGCAGAGCGACCTGGACAAGCTCGCCGCTAAGTTCTATTTCCACGCTAGAAGCTTCTCGGAGATCTACAAATCAAGCTTCCTATCTGTTTCTTTAAAATTTTCTGGTGGTGGTGGCGTTGTTGTGGAGGTCGGTGGAGAAGGAGGCGGTGTTGATTTGGTCGTGGACAGAGGAGAAGGATCGGGGGATGGAGGGATTGGGCTAGGAAGAGAAGCAGGAGTGAGTGGGCTGGAGGATGAAGAAGGTGGAGCCGATGAGAAGGTATGGGTTTGTGGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

107

Amino Acids

10.91

Weight (kDa)

4.64

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 5 - 39 8.2e-08 Domain of unknown function (DUF7032)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 66, 186
AclWI GGATC 1 cut(s) 226
AcsI RAATTY 1 cut(s) 137
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 5 cut(s) 16, 34, 61, 93, 117
AluI AGCT 5 cut(s) 16, 34, 61, 93, 117
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 137
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 87, 242
BfmI CTRYAG 1 cut(s) 22
BglII AGATCT 1 cut(s) 102
BisI GCNGC 2 cut(s) 28, 66
BlsI GCNGC 2 cut(s) 29, 67
Bme1390I CCNGG 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
BseBI CCWGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 232, 280
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 102, 218
BspACI CCGC 2 cut(s) 66, 186
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 226
BssMI GATC 2 cut(s) 102, 218
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 32, 63
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 232, 280
BstKTI GATC 2 cut(s) 105, 221
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 102, 218
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BtsCI GGATG 2 cut(s) 232, 280
Cac8I GCNNGC 2 cut(s) 32, 63
CviJI RGCY 8 cut(s) 16, 34, 61, 93, 117, 241, 268, 290
CviKI_1 RGCY 8 cut(s) 16, 34, 61, 93, 117, 241, 268, 290
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 104, 220
DpnII GATC 2 cut(s) 102, 218
DraI TTTAAA 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 51
FaiI YATR 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 28, 66
FokI GGATG 2 cut(s) 239, 287
Fsp4HI GCNGC 2 cut(s) 28, 66
FspBI CTAG 2 cut(s) 87, 242
GluI GCNGC 2 cut(s) 28, 66
GsuI CTGGAG 1 cut(s) 290
HindIII AAGCTT 4 cut(s) 14, 32, 91, 115
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 4 cut(s) 173, 209, 275, 292
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 69
Kzo9I GATC 2 cut(s) 102, 218
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 5 cut(s) 38, 65, 129, 240, 254
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 30
MaeI CTAG 2 cut(s) 87, 242
MalI GATC 2 cut(s) 104, 220
MboI GATC 2 cut(s) 102, 218
MboII GAAGA 2 cut(s) 258, 290
MflI RGATCY 1 cut(s) 102
MluCI AATT 1 cut(s) 137
MnlI CCTC 7 cut(s) 20, 160, 176, 203, 224, 265, 308
MseI TTAA 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 2 cut(s) 102, 218
NlaIV GGNNCC 1 cut(s) 289
PkrI GCNGC 2 cut(s) 29, 67
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 102
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 2 cut(s) 28, 66
Sau3AI GATC 2 cut(s) 102, 218
ScrFI CCNGG 1 cut(s) 53
SetI ASST 9 cut(s) 18, 36, 54, 63, 95, 119, 171, 286, 303
SfaNI GCATC 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 137
SsiI CCGC 2 cut(s) 66, 186
SspMI CTAG 2 cut(s) 87, 242
StyD4I CCNGG 1 cut(s) 51
TasI AATT 1 cut(s) 137
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 291
XapI RAATTY 1 cut(s) 137
XspI CTAG 2 cut(s) 87, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.