Rh3CG159500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003482
Physical Location & Seq
Forward (+)
13405411 .. 13405770
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG159500.1

Sequence Viewer

Length: 360 bp
ATGGTAGATCTGATCGACCTCCAGCAGAATCGGCTCAACGACGTCGTGGCGAATGAGCTCGAACCTGGGATTCCCGAAATGGTGCGCCACATTCTCCTTCCTCCCGGTGAAGAAATTGTCAATGACGATGACATCGTTCCCTCTGGAGAGCAACTTATCGACGAGGTGGGAGCCGACGAAGCCGGCGCCACCGGTGACGACGATCCGGAGCCTGCGCTTGCCGAGGCCGGCGGGGACCCTGCCGGCGTTGCTGCGGAGGTCGGTGGCGAAGGAGGCGGTGTTGATACGGTCGTGGAGGGAGGAGGAGGAGGAGAAGGATCGGGGGATGGAGGGATTGGGCTCGGAAGGGGAGAGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

11.69

Weight (kDa)

4.05

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 3 cut(s) 231, 254, 276
AclWI GGATC 2 cut(s) 197, 325
AcyI GRCGYC 2 cut(s) 42, 186
AgeI ACCGGT 1 cut(s) 191
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 2 cut(s) 197, 325
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 251
AsiGI ACCGGT 1 cut(s) 191
AspLEI GCGC 3 cut(s) 87, 188, 217
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 119, 206
AvaII GGWCC 1 cut(s) 235
BaeI ACNNNNGTAYC 2 cut(s) 276, 309
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 2 cut(s) 60, 342
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 66
BcnI CCSGG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 189
BglII AGATCT 1 cut(s) 7
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 66, 105
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 5 cut(s) 172, 187, 210, 236, 237
BmrFI CCNGG 2 cut(s) 66, 105
BpmI CTGGAG 2 cut(s) 5, 165
BpuMI CCSGG 1 cut(s) 105
BsaHI GRCGYC 2 cut(s) 42, 186
BsaJI CCNNGG 2 cut(s) 65, 222
BsaWI WCCGGW 2 cut(s) 191, 205
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse118I RCCGGY 4 cut(s) 182, 191, 227, 242
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 65, 222
BseGI GGATG 1 cut(s) 331
BseRI GAGGAG 4 cut(s) 315, 318, 321, 324
BseXI GCAGC 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 6 cut(s) 105, 183, 192, 206, 228, 243
BslFI GGGAC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 60, 342
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 4 cut(s) 7, 12, 202, 317
BspACI CCGC 3 cut(s) 231, 254, 276
BspANI GGCC 1 cut(s) 227
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 5 cut(s) 172, 187, 210, 236, 237
BspPI GGATC 2 cut(s) 197, 325
BspT107I GGYRCC 1 cut(s) 185
BsrFI RCCGGY 4 cut(s) 182, 191, 227, 242
BssAI RCCGGY 4 cut(s) 182, 191, 227, 242
BssECI CCNNGG 2 cut(s) 65, 222
BssMI GATC 4 cut(s) 7, 12, 202, 317
BssNI GRCGYC 2 cut(s) 42, 186
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 289
BstACI GRCGYC 2 cut(s) 42, 186
BstC8I GCNNGC 5 cut(s) 184, 213, 219, 229, 244
BstF5I GGATG 1 cut(s) 331
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 3 cut(s) 87, 188, 217
BstKTI GATC 4 cut(s) 10, 15, 205, 320
BstMBI GATC 4 cut(s) 7, 12, 202, 317
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 4 cut(s) 31, 179, 248, 273
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 64, 103
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 331
Cac8I GCNNGC 5 cut(s) 184, 213, 219, 229, 244
CfoI GCGC 3 cut(s) 87, 188, 217
Cfr10I RCCGGY 4 cut(s) 182, 191, 227, 242
Cfr13I GGNCC 1 cut(s) 235
CspAI ACCGGT 1 cut(s) 191
CviJI RGCY 7 cut(s) 34, 58, 173, 182, 211, 227, 340
CviKI_1 RGCY 7 cut(s) 34, 58, 173, 182, 211, 227, 340
DinI GGCGCC 1 cut(s) 187
DpnI GATC 4 cut(s) 9, 14, 204, 319
DpnII GATC 4 cut(s) 7, 12, 202, 317
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 2 cut(s) 60, 342
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 64
EcoT38I GRGCYC 2 cut(s) 60, 342
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
FaqI GGGAC 1 cut(s) 248
FauI CCCGC 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 2 cut(s) 60, 342
Fsp4HI GCNGC 1 cut(s) 252
GlaI GCGC 3 cut(s) 86, 187, 216
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 5, 165
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 227
HapII CCGG 6 cut(s) 105, 183, 192, 206, 228, 243
HhaI GCGC 3 cut(s) 87, 188, 217
Hin1I GRCGYC 2 cut(s) 42, 186
Hin6I GCGC 3 cut(s) 85, 186, 215
HinP1I GCGC 3 cut(s) 85, 186, 215
HinfI GANTC 2 cut(s) 28, 70
HpaII CCGG 6 cut(s) 105, 183, 192, 206, 228, 243
HphI GGTGA 2 cut(s) 119, 206
Hpy188I TCNGA 2 cut(s) 12, 344
Hpy188III TCNNGA 3 cut(s) 74, 144, 206
Hpy99I CGWCG 5 cut(s) 44, 47, 164, 179, 203
HpyAV CCTTC 4 cut(s) 107, 263, 308, 339
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 179, 248, 273
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 2 cut(s) 42, 186
HspAI GCGC 3 cut(s) 85, 186, 215
KasI GGCGCC 1 cut(s) 185
KflI GGGWCCC 1 cut(s) 235
Kpn2I TCCGGA 1 cut(s) 205
KroI GCCGGC 3 cut(s) 182, 227, 242
KroNI GCCGGC 3 cut(s) 184, 229, 244
Kzo9I GATC 4 cut(s) 7, 12, 202, 317
LmnI GCTCC 2 cut(s) 170, 208
Lsp1109I GCAGC 1 cut(s) 238
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 194
MalI GATC 4 cut(s) 9, 14, 204, 319
MboI GATC 4 cut(s) 7, 12, 202, 317
MboII GAAGA 1 cut(s) 122
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 60, 342
MluCI AATT 1 cut(s) 114
Mly113I GGCGCC 1 cut(s) 186
MroI TCCGGA 1 cut(s) 205
MroNI GCCGGC 3 cut(s) 182, 227, 242
MspI CCGG 6 cut(s) 105, 183, 192, 206, 228, 243
MspR9I CCNGG 2 cut(s) 66, 105
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 31, 179, 248, 273
NaeI GCCGGC 3 cut(s) 184, 229, 244
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 105
NdeII GATC 4 cut(s) 7, 12, 202, 317
NgoMIV GCCGGC 3 cut(s) 182, 227, 242
NlaIV GGNNCC 5 cut(s) 172, 187, 210, 236, 237
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdiI GCCGGC 3 cut(s) 184, 229, 244
PfeI GAWTC 2 cut(s) 28, 70
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 1 cut(s) 253
PluTI GGCGCC 1 cut(s) 189
PpuMI RGGWCCY 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 5 cut(s) 172, 187, 210, 236, 237
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 1 cut(s) 7
SacI GAGCTC 1 cut(s) 60
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 4 cut(s) 7, 12, 202, 317
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 66, 105
SduI GDGCHC 2 cut(s) 60, 342
SetI ASST 6 cut(s) 21, 45, 60, 67, 168, 261
SfoI GGCGCC 1 cut(s) 187
SgrAI CRCCGGYG 1 cut(s) 191
SinI GGWCC 1 cut(s) 235
Sse9I AATT 1 cut(s) 114
SsiI CCGC 3 cut(s) 231, 254, 276
SspDI GGCGCC 1 cut(s) 185
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 64, 103
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 15, 60, 159
TasI AATT 1 cut(s) 114
TfiI GAWTC 2 cut(s) 28, 70
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 235
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.