Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Forward (+)

6588956 .. 6589810

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGACAATCCCGAGCCCGGGCTTACCGAGGTTGGCAGGGACCTTGCCGGCGTTGTGGGGAGAGGCGGGAGAGAGTGGGCTGGAGAATGAAGAAGGTGGAGCCGACGAGAATGCCAACGAGGATGAAGAGGAGGTGTTGCTCTTTGAAGATGTAGTTGAAGGATCCGGGGAGAGATTTGGGTTGCTTAAAGGCTTTGGTGGACCTCATCTTCTTGTTCTTCTTGTTCGTCGCAGAGATGGAGATGGATTAGGCTTGGTGGTGGATGATGGTGACAAAGTGAAGCAAGTGGATTTTAATGGAAGAAAAGGAGGAATCGAATACTTGATCGATAACCAAGCCCGGCTAGGGATAATGGGGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGAGGGTGGAGAGAGAGGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.7

Weight (kDa)

5.08

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	2 cut(s)	159, 172
AfiI	CCNNNNNNNGG	3 cut(s)	19, 20, 348
AgsI	TTSAA	2 cut(s)	149, 161
AlwI	GGATC	2 cut(s)	159, 172
Ama87I	CYCGRG	2 cut(s)	13, 19
AspS9I	GGNCC	2 cut(s)	42, 203
AsuC2I	CCSGG	4 cut(s)	20, 21, 169, 343
AsuHPI	GGTGA	1 cut(s)	284
AvaI	CYCGRG	2 cut(s)	13, 19
AvaII	GGWCC	2 cut(s)	42, 203
BamHI	GGATCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	3 cut(s)	233, 239, 263
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BcnI	CCSGG	4 cut(s)	20, 21, 169, 343
BfaI	CTAG	1 cut(s)	347
Bme1390I	CCNGG	4 cut(s)	20, 21, 169, 343
Bme18I	GGWCC	2 cut(s)	42, 203
BmeT110I	CYCGRG	2 cut(s)	13, 19
BmgT120I	GGNCC	2 cut(s)	42, 203
BmiI	GGNNCC	3 cut(s)	43, 103, 166
BmrFI	CCNGG	4 cut(s)	20, 21, 169, 343
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	104
BpuMI	CCSGG	4 cut(s)	20, 21, 169, 343
Bsa29I	ATCGAT	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	19, 29, 168
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 20, 348
Bse118I	RCCGGY	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	19, 29, 168
BseGI	GGATG	2 cut(s)	130, 271
BseLI	CCNNNNNNNGG	3 cut(s)	19, 20, 348
BseRI	GAGGAG	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	330
BsiHKCI	CYCGRG	2 cut(s)	13, 19
BsiSI	CCGG	4 cut(s)	20, 50, 168, 343
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	19, 20, 348
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	118
BsoBI	CYCGRG	2 cut(s)	13, 19
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	164, 327
BspACI	CCGC	1 cut(s)	68
BspDI	ATCGAT	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	43, 103, 166
BspPI	GGATC	2 cut(s)	159, 172
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	19, 29, 168
BssMI	GATC	2 cut(s)	164, 327
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	130, 271
BstKTI	GATC	2 cut(s)	167, 330
BstMBI	GATC	2 cut(s)	164, 327
BstSCI	CCNGG	4 cut(s)	18, 19, 167, 341
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	130, 271
Cac8I	GCNNGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	42, 203
Cfr9I	CCCGGG	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	330
CviJI	RGCY	8 cut(s)	18, 24, 82, 104, 195, 255, 341, 346
CviKI_1	RGCY	8 cut(s)	18, 24, 82, 104, 195, 255, 341, 346
DpnI	GATC	2 cut(s)	166, 329
DpnII	GATC	2 cut(s)	164, 327
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	42, 203
Eco88I	CYCGRG	2 cut(s)	13, 19
EcoO109I	RGGNCCY	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	20
FaqI	GGGAC	1 cut(s)	55
FauI	CCCGC	1 cut(s)	61
FokI	GGATG	2 cut(s)	137, 278
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	104
HapII	CCGG	4 cut(s)	20, 50, 168, 343
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	4 cut(s)	20, 50, 168, 343
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	2 cut(s)	110, 234
HpyAV	CCTTC	4 cut(s)	89, 155, 367, 382
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	164, 327
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	6 cut(s)	24, 33, 63, 68, 181, 356
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	166, 329
MboI	GATC	2 cut(s)	164, 327
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	20
MnlI	CCTC	9 cut(s)	24, 58, 115, 124, 127, 216, 305, 385, 398
MroNI	GCCGGC	1 cut(s)	49
MseI	TTAA	2 cut(s)	189, 297
MspI	CCGG	4 cut(s)	20, 50, 168, 343
MspR9I	CCNGG	4 cut(s)	20, 21, 169, 343
Mva1269I	GAATGC	1 cut(s)	118
NaeI	GCCGGC	1 cut(s)	51
NciI	CCSGG	4 cut(s)	20, 21, 169, 343
NdeII	GATC	2 cut(s)	164, 327
NgoMIV	GCCGGC	1 cut(s)	49
NlaIV	GGNNCC	3 cut(s)	43, 103, 166
NmuCI	GTSAC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	315
PpuMI	RGGWCCY	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	43, 103, 166
PspPI	GGNCC	2 cut(s)	42, 203
PspPPI	RGGWCCY	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	189, 297
Sau3AI	GATC	2 cut(s)	164, 327
Sau96I	GGNCC	2 cut(s)	42, 203
ScrFI	CCNGG	4 cut(s)	20, 21, 169, 343
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	5 cut(s)	35, 47, 100, 138, 208
SinI	GGWCC	2 cut(s)	42, 203
SmaI	CCCGGG	1 cut(s)	21
SrfI	GCCCGGGC	1 cut(s)	21
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	4 cut(s)	18, 19, 167, 341
TaqI	TCGA	2 cut(s)	318, 330
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	189, 297
Tru9I	TTAA	2 cut(s)	189, 297
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	3 cut(s)	17, 105, 141
TspMI	CCCGGG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	42, 203
XmaI	CCCGGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.