Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Reverse (-)

22880074 .. 22880784

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATTTTAAAAAAATGACAAGAAATTGTAGTAGGAAAGGATATAATGGTCTTGACAGGGTTGAATTTGTAATGAACAGGGGAGGCAGGGCAAGCGAGATGGTAGATCTGGTCGACCTCGAGCAGAAGCGGCTCGACCACGTCGTGCCGGATGAGCTCAAACCTCGGGTTTCCGAAATGGTGCATCACATTCTCCTTCCTTCCGGTGAAGAAATTGTCCACAACGATCACGCTGTCGCCTCGCTCAATCAGACGGTCCACAAGATGCGATCCGACGAACCCGGCCCCGCCAGTCACGACGATCCGGAGCCCCTTTCGTTTCAGCCCCAGGGGCACCTTGCCGCCAGAATTCCAGCTGTTCAACCCGAACCGTCGGTCGTAGGCCGGCTTGTAATGGGCCGTCGCCGACGAATCGAAGTCGTACCGGACGTACTCGTTCGAGATCGGGACGTTACCGGTGGCGTACGGAGAAATAGGGGCGGAAGACGGGAGGAGGGTGAACACTACGGTGGCGATAGCAATGCCCACAAGGATGAAAACGAGGCGCTGCTCTCGGAGCAAGTACTGAATCGGGCGGGTCACGGAGGCCCACGGCTTCGGAGGTTTGGGCGAATAGGTGTCCGCCACCTGTTGGTCCGCTTCGTGCCCTCGGAAAATCAGCCCCGAACCCATTTGTCGGAACTGCGTCGGAAGAGGAAGAGTGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.83

Weight (kDa)

9.9

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	333
AccB7I	CCANNNNNTGG	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	7 cut(s)	130, 288, 342, 480, 575, 622, 637
AclWI	GGATC	2 cut(s)	264, 296
AcsI	RAATTY	3 cut(s)	4, 65, 348
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	4 cut(s)	423, 432, 465, 564
AfiI	CCNNNNNNNGG	2 cut(s)	631, 676
AgeI	ACCGGT	1 cut(s)	455
AgsI	TTSAA	2 cut(s)	65, 362
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	327
AleI	CACNNNNGTG	1 cut(s)	507
AluBI	AGCT	2 cut(s)	157, 356
AluI	AGCT	2 cut(s)	157, 356
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	264, 296
Ama87I	CYCGRG	2 cut(s)	119, 165
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	4 cut(s)	283, 382, 397, 586
ApeKI	GCWGC	1 cut(s)	547
ApoI	RAATTY	3 cut(s)	4, 65, 348
ArsI	GACNNNNNNTTYG	2 cut(s)	360, 392
AsiGI	ACCGGT	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	5 cut(s)	256, 284, 397, 587, 634
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	218, 509
AvaI	CYCGRG	2 cut(s)	119, 165
AvaII	GGWCC	2 cut(s)	256, 634
BaeGI	GKGCMC	2 cut(s)	336, 648
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	2 cut(s)	159, 312
BbsI	GAAGAC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	2 cut(s)	384, 608
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	548
BglI	GCCNNNNNGGC	1 cut(s)	331
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	3 cut(s)	131, 342, 548
BlsI	GCNGC	3 cut(s)	132, 343, 549
BmcAI	AGTACT	1 cut(s)	564
Bme1390I	CCNGG	2 cut(s)	282, 329
Bme18I	GGWCC	2 cut(s)	256, 634
BmeT110I	CYCGRG	2 cut(s)	119, 165
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	5 cut(s)	256, 284, 397, 587, 634
BmiI	GGNNCC	3 cut(s)	286, 309, 335
BmrFI	CCNGG	2 cut(s)	282, 329
BmsI	GCATC	2 cut(s)	193, 255
BpiI	GAAGAC	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	282
BsaJI	CCNNGG	5 cut(s)	164, 327, 328, 590, 648
BsaWI	WCCGGW	4 cut(s)	203, 304, 424, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 676
Bse118I	RCCGGY	2 cut(s)	384, 455
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	526
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	5 cut(s)	164, 327, 328, 590, 648
BseGI	GGATG	2 cut(s)	157, 538
BseLI	CCNNNNNNNGG	2 cut(s)	631, 676
BseMI	GCAATG	1 cut(s)	526
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	2 cut(s)	336, 648
BseXI	GCAGC	1 cut(s)	534
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	4 cut(s)	285, 384, 399, 588
BshNI	GGYRCC	1 cut(s)	333
BshTI	ACCGGT	1 cut(s)	455
BsiEI	CGRYCG	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	119, 165
BsiSI	CCGG	7 cut(s)	149, 204, 282, 305, 385, 425, 456
BsiWI	CGTACG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	631, 676
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	4 cut(s)	285, 384, 399, 588
BsoBI	CYCGRG	2 cut(s)	119, 165
Bsp1286I	GDGCHC	4 cut(s)	159, 312, 336, 648
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	5 cut(s)	106, 226, 269, 301, 442
BspACI	CCGC	7 cut(s)	130, 288, 342, 480, 575, 622, 637
BspANI	GGCC	4 cut(s)	285, 384, 399, 588
BspEI	TCCGGA	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	286, 309, 335
BspPI	GGATC	2 cut(s)	264, 296
BspT107I	GGYRCC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	526
BsrFI	RCCGGY	2 cut(s)	384, 455
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	2 cut(s)	384, 455
BssECI	CCNNGG	5 cut(s)	164, 327, 328, 590, 648
BssMI	GATC	5 cut(s)	106, 226, 269, 301, 442
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	256, 372, 509
Bst6I	CTCTTC	2 cut(s)	686, 692
BstC8I	GCNNGC	2 cut(s)	94, 386
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	157, 538
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	5 cut(s)	109, 229, 272, 304, 445
BstMBI	GATC	5 cut(s)	106, 226, 269, 301, 442
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 130, 154, 331, 556
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	280, 327
BstSLI	GKGCMC	2 cut(s)	336, 648
BstV1I	GCAGC	1 cut(s)	534
BstV2I	GAAGAC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	285, 384, 399, 588
BtgI	CCRYGG	1 cut(s)	590
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	157, 538
Cac8I	GCNNGC	2 cut(s)	94, 386
CfoI	GCGC	1 cut(s)	547
Cfr10I	RCCGGY	2 cut(s)	384, 455
Cfr13I	GGNCC	5 cut(s)	256, 284, 397, 587, 634
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	4 cut(s)	422, 431, 464, 563
CspAI	ACCGGT	1 cut(s)	455
CviQI	GTAC	4 cut(s)	422, 431, 464, 563
DpnI	GATC	5 cut(s)	108, 228, 271, 303, 444
DpnII	GATC	5 cut(s)	106, 226, 269, 301, 442
DraI	TTTAAA	1 cut(s)	10
DraIII	CACNNNGTG	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	686, 692
EarI	CTCTTC	2 cut(s)	686, 692
EciI	GGCGGA	2 cut(s)	495, 611
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	2 cut(s)	159, 312
Eco47I	GGWCC	2 cut(s)	256, 634
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	2 cut(s)	119, 165
EcoICRI	GAGCTC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	327
EcoT38I	GRGCYC	2 cut(s)	159, 312
FaiI	YATR	1 cut(s)	45
FaqI	GGGAC	1 cut(s)	461
FauI	CCCGC	2 cut(s)	295, 568
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	131, 342, 548
FokI	GGATG	2 cut(s)	164, 545
FriOI	GRGCYC	2 cut(s)	159, 312
Fsp4HI	GCNGC	3 cut(s)	131, 342, 548
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	3 cut(s)	131, 342, 548
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	4 cut(s)	285, 384, 399, 588
HapII	CCGG	7 cut(s)	149, 204, 282, 305, 385, 425, 456
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	1 cut(s)	547
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	411, 568
HpaII	CCGG	7 cut(s)	149, 204, 282, 305, 385, 425, 456
HphI	GGTGA	2 cut(s)	218, 509
Hpy166II	GTNNAC	4 cut(s)	115, 220, 259, 500
Hpy188I	TCNGA	8 cut(s)	175, 252, 274, 556, 600, 652, 679, 690
Hpy188III	TCNNGA	5 cut(s)	53, 296, 305, 440, 446
Hpy8I	GTNNAC	4 cut(s)	115, 220, 259, 500
Hpy99I	CGWCG	7 cut(s)	146, 278, 302, 376, 405, 411, 690
HpyAV	CCTTC	2 cut(s)	206, 210
HpyCH4III	ACNGT	3 cut(s)	256, 372, 509
HpyCH4IV	ACGT	3 cut(s)	141, 429, 450
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 130, 154, 331, 556
HpySE526I	ACGT	3 cut(s)	141, 429, 450
HspAI	GCGC	1 cut(s)	545
Kpn2I	TCCGGA	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	384
KroNI	GCCGGC	1 cut(s)	386
Kzo9I	GATC	5 cut(s)	106, 226, 269, 301, 442
LmnI	GCTCC	2 cut(s)	307, 556
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	2 cut(s)	193, 255
MaeII	ACGT	3 cut(s)	141, 429, 450
MaeIII	GTNAC	3 cut(s)	293, 451, 578
MalI	GATC	5 cut(s)	108, 228, 271, 303, 444
MboI	GATC	5 cut(s)	106, 226, 269, 301, 442
MboII	GAAGA	4 cut(s)	221, 495, 703, 709
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	4 cut(s)	159, 312, 336, 648
MluCI	AATT	5 cut(s)	4, 25, 65, 213, 348
MmeI	TCCRAC	3 cut(s)	297, 657, 668
MroI	TCCGGA	1 cut(s)	304
MroNI	GCCGGC	1 cut(s)	384
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	2 cut(s)	507, 531
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	7 cut(s)	149, 204, 282, 305, 385, 425, 456
MspR9I	CCNGG	2 cut(s)	282, 329
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	5 cut(s)	93, 130, 154, 331, 556
NaeI	GCCGGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	5 cut(s)	106, 226, 269, 301, 442
NgoMIV	GCCGGC	1 cut(s)	384
NlaIV	GGNNCC	3 cut(s)	286, 309, 335
NmuCI	GTSAC	2 cut(s)	293, 578
OliI	CACNNNNGTG	1 cut(s)	507
PaeR7I	CTCGAG	1 cut(s)	119
PasI	CCCWGGG	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 426
PdiI	GCCGGC	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	411, 568
Pfl23II	CGTACG	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	631
PinAI	ACCGGT	1 cut(s)	455
PkrI	GCNGC	3 cut(s)	132, 343, 549
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspLI	CGTACG	1 cut(s)	463
PspN4I	GGNNCC	3 cut(s)	286, 309, 335
PspPI	GGNCC	5 cut(s)	256, 284, 397, 587, 634
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	4 cut(s)	423, 432, 465, 564
RsaNI	GTAC	4 cut(s)	422, 431, 464, 563
RseI	CAYNNNNRTG	2 cut(s)	507, 531
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	3 cut(s)	131, 342, 548
Sau3AI	GATC	5 cut(s)	106, 226, 269, 301, 442
Sau96I	GGNCC	5 cut(s)	256, 284, 397, 587, 634
ScaI	AGTACT	1 cut(s)	564
ScrFI	CCNGG	2 cut(s)	282, 329
SduI	GDGCHC	4 cut(s)	159, 312, 336, 648
SfaNI	GCATC	2 cut(s)	193, 255
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	256, 634
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	507, 531
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	5 cut(s)	4, 25, 65, 213, 348
SsiI	CCGC	7 cut(s)	130, 288, 342, 480, 575, 622, 637
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	280, 327
TaaI	ACNGT	3 cut(s)	256, 372, 509
TaiI	ACGT	3 cut(s)	144, 432, 453
TaqI	TCGA	5 cut(s)	114, 120, 135, 414, 439
TaqII	GACCGA	1 cut(s)	364
TasI	AATT	5 cut(s)	4, 25, 65, 213, 348
TatI	WGTACW	1 cut(s)	562
TauI	GCSGC	2 cut(s)	133, 344
TfiI	GAWTC	2 cut(s)	411, 568
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	2 cut(s)	293, 578
TseI	GCWGC	1 cut(s)	547
Tsp45I	GTSAC	2 cut(s)	293, 578
TspDTI	ATGAA	3 cut(s)	17, 89, 549
TspGWI	ACGGA	2 cut(s)	481, 597
Tth111I	GACNNNGTC	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	631
VpaK11BI	GGWCC	2 cut(s)	256, 634
XapI	RAATTY	3 cut(s)	4, 65, 348
XhoI	CTCGAG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.