Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Reverse (-)

88178684 .. 88178878

Gene Structure 195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG574800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAGACAACCACAATGGGGGAAGAAGAGCAGAGCAGCAGTCAAGGCAAAGAACCAAACCATTCAGTCCATCTCGTCCCTCATCCCCCTCATCTACTCCATCAAAATCTTCGCCGGAAAATGGAAAACCATAACATCCAAGCTCGAAGAACTCAACTCCGGCCTCGCCGCAGTCGAAAACTCCGACGGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

64

Amino Acids

7.05

Weight (kDa)

9.9

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7032	PF23005	19 - 60	5.9e-11	Domain of unknown function (DUF7032)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	17, 120
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	2 cut(s)	77, 107
BisI	GCNGC	2 cut(s)	36, 168
BlsI	GCNGC	2 cut(s)	37, 169
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 120
BseGI	GGATG	2 cut(s)	81, 134
BseLI	CCNNNNNNNGG	2 cut(s)	17, 120
BseXI	GCAGC	1 cut(s)	47
BshFI	GGCC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	114, 159
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	17, 120
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	81, 134
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	81, 134
CviJI	RGCY	2 cut(s)	142, 162
CviKI_1	RGCY	2 cut(s)	142, 162
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
FaiI	YATR	1 cut(s)	131
FaqI	GGGAC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	36, 168
FokI	GGATG	2 cut(s)	68, 121
Fsp4HI	GCNGC	2 cut(s)	36, 168
GluI	GCNGC	2 cut(s)	36, 168
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	2 cut(s)	114, 159
HpaII	CCGG	2 cut(s)	114, 159
Hpy188I	TCNGA	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
LguI	GCTCTTC	1 cut(s)	20
LpnPI	CCDG	2 cut(s)	127, 172
Lsp1109I	GCAGC	1 cut(s)	47
MboII	GAAGA	4 cut(s)	34, 37, 100, 158
MnlI	CCTC	3 cut(s)	89, 98, 173
MspI	CCGG	2 cut(s)	114, 159
MwoI	GCNNNNNNNGC	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 180
PkrI	GCNGC	2 cut(s)	37, 169
SapI	GCTCTTC	1 cut(s)	20
SatI	GCNGC	2 cut(s)	36, 168
SetI	ASST	1 cut(s)	144
SgeI	CNNG	7 cut(s)	55, 85, 126, 151, 155, 171, 176
SsiI	CCGC	1 cut(s)	168
TaqI	TCGA	2 cut(s)	144, 174
TauI	GCSGC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.