RLG00000001246

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003482
Physical Location & Seq
Reverse (-)
12797960 .. 12799007
1048 bp
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UTR
Exon/CDS
Intron
RLM00000001246

Sequence Viewer

Length: 414 bp
ATGCCGCCTCTCCGCCCAAACCTCCACCCTCAGATTCGCTCCCACACGTGTCTCCTCAAGCTTTCCTATAACAGCAAGCTTCTGATGCAGAGCGACCTGGACAACCTCGCCGCTAAGTTCTATTTCCACGCCAGAAGCTTCTCGGAGATCTACAAATCAAGCTTCCTATCTGTTTCTTTAAAATTTTTTGGTCGTTTCGGAAAGACGACGATTAGAAGGGTATTTTGGTGCGGTGGCGGTGGTGGTGGCATTGTTGTGGAGGTCGGTGGAAAAGGAGGCGGTGTTGATTCCGTCGTGGATGGAGGAGAAGGATCGGGGGATGGAGGGATTGGGCTAGGAAGAAAAGCAGGAGAGAATGGGCTGGAGGATGAAGAAGGTGGAGCCGATGAGAAGGTATGGGTTTGTGGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.5

Weight (kDa)

7.73

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 15 - 54 6.2e-08 Domain of unknown function (DUF7032)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 5, 13, 111, 231, 237, 279
AclWI GGATC 1 cut(s) 319
AcsI RAATTY 1 cut(s) 182
AcvI CACGTG 1 cut(s) 48
AflIII ACRYGT 2 cut(s) 45, 47
AjnI CCWGG 1 cut(s) 96
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 4 cut(s) 61, 79, 138, 162
AluI AGCT 4 cut(s) 61, 79, 138, 162
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 182
BbrPI CACGTG 1 cut(s) 48
BccI CCATC 2 cut(s) 293, 314
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 335
BglII AGATCT 1 cut(s) 147
BisI GCNGC 2 cut(s) 5, 111
BlsI GCNGC 2 cut(s) 6, 112
Bme1390I CCNGG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
BseBI CCWGG 1 cut(s) 98
BseGI GGATG 3 cut(s) 304, 325, 373
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 2 cut(s) 44, 318
BsmAI GTCTC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 147, 311
BspACI CCGC 6 cut(s) 5, 13, 111, 231, 237, 279
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 382
BspPI GGATC 1 cut(s) 319
BssMI GATC 2 cut(s) 147, 311
Bst2UI CCWGG 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 30, 114
BstF5I GGATG 3 cut(s) 304, 325, 373
BstKTI GATC 2 cut(s) 150, 314
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 147, 311
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BtsCI GGATG 3 cut(s) 304, 325, 373
Cac8I GCNNGC 1 cut(s) 77
CviJI RGCY 7 cut(s) 61, 79, 138, 162, 334, 361, 383
CviKI_1 RGCY 7 cut(s) 61, 79, 138, 162, 334, 361, 383
DdeI CTNAG 2 cut(s) 30, 114
DpnI GATC 2 cut(s) 149, 313
DpnII GATC 2 cut(s) 147, 311
DraI TTTAAA 1 cut(s) 180
Eco72I CACGTG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 96
FaiI YATR 2 cut(s) 69, 397
Fnu4HI GCNGC 2 cut(s) 5, 111
FokI GGATG 3 cut(s) 311, 332, 380
Fsp4HI GCNGC 2 cut(s) 5, 111
FspBI CTAG 1 cut(s) 335
GluI GCNGC 2 cut(s) 5, 111
GsuI CTGGAG 1 cut(s) 383
HindIII AAGCTT 4 cut(s) 59, 77, 136, 160
HinfI GANTC 2 cut(s) 34, 287
Hpy188I TCNGA 4 cut(s) 33, 84, 145, 200
Hpy99I CGWCG 2 cut(s) 211, 296
HpyAV CCTTC 4 cut(s) 210, 302, 368, 385
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 2 cut(s) 30, 114
HpySE526I ACGT 1 cut(s) 47
Kzo9I GATC 2 cut(s) 147, 311
LmnI GCTCC 2 cut(s) 44, 380
LpnPI CCDG 5 cut(s) 83, 110, 145, 333, 347
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 47
MalI GATC 2 cut(s) 149, 313
MboI GATC 2 cut(s) 147, 311
MboII GAAGA 2 cut(s) 351, 383
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 182
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 2 cut(s) 147, 311
NlaIV GGNNCC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 34, 287
PkrI GCNGC 2 cut(s) 6, 112
PmaCI CACGTG 1 cut(s) 48
PmlI CACGTG 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 96
PspCI CACGTG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 382
PsuI RGATCY 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 2 cut(s) 5, 111
Sau3AI GATC 2 cut(s) 147, 311
ScrFI CCNGG 1 cut(s) 98
SfaNI GCATC 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 182
SsiI CCGC 6 cut(s) 5, 13, 111, 231, 237, 279
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 96
TaiI ACGT 1 cut(s) 50
TasI AATT 1 cut(s) 182
TauI GCSGC 2 cut(s) 7, 113
TfiI GAWTC 2 cut(s) 34, 287
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 384
TspGWI ACGGA 1 cut(s) 280
XapI RAATTY 1 cut(s) 182
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.