No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD11G1310000.v1.1 |
| pyrus_communis | pycom03g22820 pycom11g27090 |
| rosa_chinensis | RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231 |
| rosa_laevigata | RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570 |
| rosa_multiflora | Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600 |
| rosa_samantha | Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 60, 190 |
| AclWI | GGATC | 1 cut(s) | 267 |
| AcoI | YGGCCR | 1 cut(s) | 154 |
| AcsI | RAATTY | 1 cut(s) | 245 |
| AgsI | TTSAA | 2 cut(s) | 237, 281 |
| AjnI | CCWGG | 1 cut(s) | 45 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 273, 305 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 251, 283 |
| AluBI | AGCT | 5 cut(s) | 28, 55, 87, 240, 276 |
| AluI | AGCT | 5 cut(s) | 28, 55, 87, 240, 276 |
| AlwI | GGATC | 1 cut(s) | 267 |
| AoxI | GGCC | 1 cut(s) | 154 |
| ApoI | RAATTY | 1 cut(s) | 245 |
| BbsI | GAAGAC | 1 cut(s) | 179 |
| BccI | CCATC | 2 cut(s) | 9, 137 |
| BceAI | ACGGC | 1 cut(s) | 169 |
| BciT130I | CCWGG | 1 cut(s) | 47 |
| BglII | AGATCT | 2 cut(s) | 6, 96 |
| BisI | GCNGC | 1 cut(s) | 60 |
| BlsI | GCNGC | 1 cut(s) | 61 |
| Bme1390I | CCNGG | 1 cut(s) | 47 |
| BmrFI | CCNGG | 1 cut(s) | 47 |
| BmrI | ACTGGG | 1 cut(s) | 237 |
| BmsI | GCATC | 1 cut(s) | 24 |
| BmuI | ACTGGG | 1 cut(s) | 237 |
| BpiI | GAAGAC | 1 cut(s) | 179 |
| Bse1I | ACTGG | 1 cut(s) | 232 |
| BseBI | CCWGG | 1 cut(s) | 47 |
| BseGI | GGATG | 1 cut(s) | 20 |
| BseNI | ACTGG | 1 cut(s) | 232 |
| BshFI | GGCC | 1 cut(s) | 156 |
| BsiSI | CCGG | 1 cut(s) | 81 |
| BsnI | GGCC | 1 cut(s) | 156 |
| Bsp143I | GATC | 3 cut(s) | 6, 96, 259 |
| BspACI | CCGC | 2 cut(s) | 60, 190 |
| BspANI | GGCC | 1 cut(s) | 156 |
| BspPI | GGATC | 1 cut(s) | 267 |
| BsrI | ACTGG | 1 cut(s) | 232 |
| BssMI | GATC | 3 cut(s) | 6, 96, 259 |
| Bst2UI | CCWGG | 1 cut(s) | 47 |
| BstC8I | GCNNGC | 2 cut(s) | 57, 109 |
| BstDEI | CTNAG | 1 cut(s) | 63 |
| BstF5I | GGATG | 1 cut(s) | 20 |
| BstKTI | GATC | 3 cut(s) | 9, 99, 262 |
| BstMBI | GATC | 3 cut(s) | 6, 96, 259 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 34 |
| BstNI | CCWGG | 1 cut(s) | 47 |
| BstSCI | CCNGG | 1 cut(s) | 45 |
| BstV2I | GAAGAC | 1 cut(s) | 179 |
| BstX2I | RGATCY | 2 cut(s) | 6, 96 |
| BstYI | RGATCY | 2 cut(s) | 6, 96 |
| BsuRI | GGCC | 1 cut(s) | 156 |
| BtsCI | GGATG | 1 cut(s) | 20 |
| Cac8I | GCNNGC | 2 cut(s) | 57, 109 |
| CseI | GACGC | 1 cut(s) | 184 |
| CviAII | CATG | 1 cut(s) | 216 |
| CviJI | RGCY | 7 cut(s) | 28, 55, 87, 111, 156, 240, 276 |
| CviKI_1 | RGCY | 7 cut(s) | 28, 55, 87, 111, 156, 240, 276 |
| DdeI | CTNAG | 1 cut(s) | 63 |
| DpnI | GATC | 3 cut(s) | 8, 98, 261 |
| DpnII | GATC | 3 cut(s) | 6, 96, 259 |
| EaeI | YGGCCR | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 45 |
| FaeI | CATG | 1 cut(s) | 219 |
| FaiI | YATR | 3 cut(s) | 217, 272, 296 |
| FatI | CATG | 1 cut(s) | 215 |
| FauI | CCCGC | 1 cut(s) | 183 |
| Fnu4HI | GCNGC | 1 cut(s) | 60 |
| FokI | GGATG | 1 cut(s) | 27 |
| Fsp4HI | GCNGC | 1 cut(s) | 60 |
| GluI | GCNGC | 1 cut(s) | 60 |
| HaeIII | GGCC | 1 cut(s) | 156 |
| HapII | CCGG | 1 cut(s) | 81 |
| HgaI | GACGC | 1 cut(s) | 184 |
| Hin1II | CATG | 1 cut(s) | 219 |
| HindIII | AAGCTT | 3 cut(s) | 26, 85, 274 |
| HinfI | GANTC | 1 cut(s) | 115 |
| HpaII | CCGG | 1 cut(s) | 81 |
| Hpy188I | TCNGA | 3 cut(s) | 33, 94, 244 |
| Hpy188III | TCNNGA | 2 cut(s) | 12, 22 |
| HpyCH4V | TGCA | 2 cut(s) | 37, 136 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 34 |
| HpyF3I | CTNAG | 1 cut(s) | 63 |
| Hsp92II | CATG | 1 cut(s) | 219 |
| Kzo9I | GATC | 3 cut(s) | 6, 96, 259 |
| LpnPI | CCDG | 9 cut(s) | 7, 32, 59, 90, 94, 121, 125, 153, 213 |
| LweI | GCATC | 1 cut(s) | 24 |
| MalI | GATC | 3 cut(s) | 8, 98, 261 |
| MboI | GATC | 3 cut(s) | 6, 96, 259 |
| MboII | GAAGA | 1 cut(s) | 184 |
| MfeI | CAATTG | 2 cut(s) | 209, 263 |
| MflI | RGATCY | 2 cut(s) | 6, 96 |
| MluCI | AATT | 5 cut(s) | 138, 180, 209, 245, 263 |
| MlyI | GAGTC | 1 cut(s) | 109 |
| MseI | TTAA | 1 cut(s) | 303 |
| MspI | CCGG | 1 cut(s) | 81 |
| MspR9I | CCNGG | 1 cut(s) | 47 |
| MunI | CAATTG | 2 cut(s) | 209, 263 |
| MvaI | CCWGG | 1 cut(s) | 47 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 34 |
| NdeII | GATC | 3 cut(s) | 6, 96, 259 |
| NlaIII | CATG | 1 cut(s) | 219 |
| PkrI | GCNGC | 1 cut(s) | 61 |
| PleI | GAGTC | 1 cut(s) | 109 |
| PpsI | GAGTC | 1 cut(s) | 109 |
| Psp6I | CCWGG | 1 cut(s) | 45 |
| PspGI | CCWGG | 1 cut(s) | 45 |
| PsuI | RGATCY | 2 cut(s) | 6, 96 |
| SaqAI | TTAA | 1 cut(s) | 303 |
| SatI | GCNGC | 1 cut(s) | 60 |
| Sau3AI | GATC | 3 cut(s) | 6, 96, 259 |
| SchI | GAGTC | 1 cut(s) | 109 |
| ScrFI | CCNGG | 1 cut(s) | 47 |
| SetI | ASST | 6 cut(s) | 30, 48, 57, 89, 242, 278 |
| SfaNI | GCATC | 1 cut(s) | 24 |
| Sse9I | AATT | 5 cut(s) | 138, 180, 209, 245, 263 |
| SsiI | CCGC | 2 cut(s) | 60, 190 |
| StyD4I | CCNGG | 1 cut(s) | 45 |
| TasI | AATT | 5 cut(s) | 138, 180, 209, 245, 263 |
| TauI | GCSGC | 1 cut(s) | 62 |
| Tru1I | TTAA | 1 cut(s) | 303 |
| Tru9I | TTAA | 1 cut(s) | 303 |
| TspDTI | ATGAA | 1 cut(s) | 259 |
| XapI | RAATTY | 1 cut(s) | 245 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 164 |