Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

19321330 .. 19324089

Gene Structure 2760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1209200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCCTCTCCTTGTTTATGTTTCTCGCGAGAAAAGACCCTCTCATCCCCATCATTTCAAGGCTGGGGCGCTCAATGTTCTTCTACGTGTGTCGGGAGTTATAAGCAATTCACCTTACATATTAGGGTTAGATTGTGACATGTACTGCAATGATGCAAGTTCGGCTCGGCAAGCAATGTGCTTCCATCTTGACCCTAAGATATCACCCTCTCTAGCATTTGTTCAATTCCCTCATAAATTTCACAACATCAGTATCAACGATATCTATGACAGTCAGTTGAGATCAATATTTACGTGGTGGAAGATTACTTCACAGGGTTTCATTTGCATTACAAAGGTTGGATTTCAGTGTTTTGTGATCCAAAAAGGCCACAATTCTTGGGTAGCGGCACCACCAAATTGGATGAGTTTTTGGTCCAAGGGACAAGATGGTTCCTCTGGCTTAGTTGATGTTGCTATCTCCAAGTTCAGTCCTCTTATATATGGCCCTTTCAAAACCCACACTTTCCTTCAAAGCATGTGTTATGCAGAAATTGCTCTCTTACCCATTTTCTATTTCTTGACACTCTGGTGCTTTGCTATCATTCCTCAAGTGTGTCTACTCAATAGCATTCCTTTGTACCCCGAGGTCTCAAATACGTATTTTATCGTATTTTCATTTGTATTCCTATCATTGCTCTCTAAACATTTATATGAGGTGCTAGCAACAGGATCAACATTTCGACATTGGGTAAATGAACAGAGAATATGGATGATGAAGTCAGTCACATCTCACTTATATGGTAGTGTGGATGCTTTCATGAAGAAACTTGGTATGAGAGAAGCCAGTTTCTCCCAACAAATAAAGTCGACGACGTTGAACAACTCAAGCTTTACAATATGGGAGTATTTGATTTCCAAACATCACTACAATTTCTTGCTCCAATGGTTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

312

Amino Acids

35.78

Weight (kDa)

9.04

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 93	3.2e-31	Cellulose synthase
Cellulose_synt	PF03552	145 - 292	4.8e-13	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	388
AccI	GTMKAC	2 cut(s)	598, 848
AccII	CGCG	1 cut(s)	27
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	2 cut(s)	352, 718
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	2 cut(s)	143, 620
AflIII	ACRYGT	2 cut(s)	85, 138
AgsI	TTSAA	5 cut(s)	58, 224, 493, 512, 859
AleI	CACNNNNGTG	1 cut(s)	568
AluBI	AGCT	1 cut(s)	870
AluI	AGCT	1 cut(s)	870
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	2 cut(s)	352, 718
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	2 cut(s)	367, 484
ApoI	RAATTY	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	414, 485
AsuHPI	GGTGA	2 cut(s)	102, 195
AsuNHI	GCTAGC	1 cut(s)	700
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	414
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanI	GGYRCC	1 cut(s)	388
BccI	CCATC	3 cut(s)	57, 192, 422
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	3 cut(s)	212, 701, 934
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	414
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	2 cut(s)	414, 485
BmiI	GGNNCC	2 cut(s)	390, 433
BmsI	GCATC	2 cut(s)	142, 781
BmtI	GCTAGC	1 cut(s)	704
BpuEI	CTTGAG	2 cut(s)	573, 850
BsaAI	YACGTR	3 cut(s)	86, 294, 639
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	417, 624
Bse1I	ACTGG	1 cut(s)	825
Bse3DI	GCAATG	3 cut(s)	154, 180, 671
BseDI	CCNNGG	2 cut(s)	417, 624
BseGI	GGATG	4 cut(s)	43, 408, 756, 796
BseMI	GCAATG	3 cut(s)	154, 180, 671
BseNI	ACTGG	1 cut(s)	825
BseYI	CCCAGC	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	369, 486
BshNI	GGYRCC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	435
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	2 cut(s)	369, 486
Bso31I	GGTCTC	1 cut(s)	634
BsoBI	CYCGRG	1 cut(s)	623
Bsp143I	GATC	3 cut(s)	281, 357, 710
Bsp68I	TCGCGA	1 cut(s)	27
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	2 cut(s)	369, 486
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	2 cut(s)	390, 433
BspOI	GCTAGC	1 cut(s)	704
BspPI	GGATC	2 cut(s)	352, 718
BspT107I	GGYRCC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	634
BsrDI	GCAATG	3 cut(s)	154, 180, 671
BsrI	ACTGG	1 cut(s)	825
BssECI	CCNNGG	2 cut(s)	417, 624
BssMI	GATC	3 cut(s)	281, 357, 710
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBAI	YACGTR	3 cut(s)	86, 294, 639
BstC8I	GCNNGC	2 cut(s)	171, 702
BstDEI	CTNAG	2 cut(s)	195, 442
BstF5I	GGATG	4 cut(s)	43, 408, 756, 796
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	3 cut(s)	284, 360, 713
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	3 cut(s)	281, 357, 710
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 170, 533
BstNSI	RCATGY	2 cut(s)	142, 520
BstSNI	TACGTA	1 cut(s)	639
BstUI	CGCG	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	369, 486
BtsCI	GGATG	4 cut(s)	43, 408, 756, 796
BtsIMutI	CAGTG	1 cut(s)	353
BtuMI	TCGCGA	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	171, 702
CciI	TCATGA	1 cut(s)	798
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	414, 485
Csp6I	GTAC	2 cut(s)	142, 619
CspCI	CAANNNNNGTGG	2 cut(s)	359, 394
CviAII	CATG	3 cut(s)	139, 517, 799
CviJI	RGCY	7 cut(s)	62, 164, 369, 441, 486, 824, 870
CviKI_1	RGCY	7 cut(s)	62, 164, 369, 441, 486, 824, 870
CviQI	GTAC	2 cut(s)	142, 619
DdeI	CTNAG	2 cut(s)	195, 442
DpnI	GATC	3 cut(s)	283, 359, 712
DpnII	GATC	3 cut(s)	281, 357, 710
Eco105I	TACGTA	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	634
Eco32I	GATATC	2 cut(s)	201, 262
Eco47I	GGWCC	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	623
EcoRV	GATATC	2 cut(s)	201, 262
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	3 cut(s)	142, 520, 802
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	3 cut(s)	138, 516, 798
FblI	GTMKAC	2 cut(s)	598, 848
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	4 cut(s)	30, 415, 763, 803
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	3 cut(s)	212, 701, 934
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	387
GsaI	CCCAGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	369, 486
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	142, 520, 802
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HindIII	AAGCTT	1 cut(s)	868
HphI	GGTGA	2 cut(s)	102, 195
Hpy166II	GTNNAC	2 cut(s)	599, 849
Hpy188III	TCNNGA	5 cut(s)	26, 93, 188, 559, 799
Hpy8I	GTNNAC	2 cut(s)	599, 849
Hpy99I	CGWCG	2 cut(s)	853, 856
HpyAV	CCTTC	1 cut(s)	518
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	4 cut(s)	85, 293, 638, 854
HpyCH4V	TGCA	4 cut(s)	147, 155, 327, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 170, 533
HpyF3I	CTNAG	2 cut(s)	195, 442
HpySE526I	ACGT	4 cut(s)	85, 293, 638, 854
Hsp92II	CATG	3 cut(s)	142, 520, 802
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	281, 357, 710
LmnI	GCTCC	1 cut(s)	924
LpnPI	CCDG	6 cut(s)	48, 299, 423, 553, 693, 838
LweI	GCATC	2 cut(s)	142, 781
MaeI	CTAG	3 cut(s)	212, 701, 934
MaeII	ACGT	4 cut(s)	85, 293, 638, 854
MaeIII	GTNAC	2 cut(s)	134, 763
MalI	GATC	3 cut(s)	283, 359, 712
MboI	GATC	3 cut(s)	281, 357, 710
MboII	GAAGA	3 cut(s)	71, 313, 814
MluCI	AATT	7 cut(s)	106, 224, 236, 373, 397, 531, 910
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	9 cut(s)	15, 49, 217, 240, 445, 483, 597, 619, 688
MslI	CAYNNNNRTG	3 cut(s)	568, 690, 777
Mva1269I	GAATGC	1 cut(s)	609
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	161, 170, 533
NdeII	GATC	3 cut(s)	281, 357, 710
NheI	GCTAGC	1 cut(s)	700
NlaIII	CATG	3 cut(s)	142, 520, 802
NlaIV	GGNNCC	2 cut(s)	390, 433
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	2 cut(s)	134, 763
NruI	TCGCGA	1 cut(s)	27
NspI	RCATGY	2 cut(s)	142, 520
OliI	CACNNNNGTG	1 cut(s)	568
PagI	TCATGA	1 cut(s)	798
PciI	ACATGT	1 cut(s)	138
PctI	GAATGC	1 cut(s)	609
PkrI	GCNGC	1 cut(s)	388
Ppu21I	YACGTR	3 cut(s)	86, 294, 639
PscI	ACATGT	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	390, 433
PspPI	GGNCC	2 cut(s)	414, 485
RruI	TCGCGA	1 cut(s)	27
RsaI	GTAC	2 cut(s)	143, 620
RsaNI	GTAC	2 cut(s)	142, 619
RseI	CAYNNNNRTG	3 cut(s)	568, 690, 777
SalI	GTCGAC	1 cut(s)	847
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	3 cut(s)	281, 357, 710
Sau96I	GGNCC	2 cut(s)	414, 485
SetI	ASST	9 cut(s)	88, 115, 296, 339, 630, 641, 699, 857, 872
SfaNI	GCATC	2 cut(s)	142, 781
SinI	GGWCC	1 cut(s)	414
SmiMI	CAYNNNNRTG	3 cut(s)	568, 690, 777
SmlI	CTYRAG	2 cut(s)	588, 865
SmoI	CTYRAG	2 cut(s)	588, 865
SnaBI	TACGTA	1 cut(s)	639
Sse9I	AATT	7 cut(s)	106, 224, 236, 373, 397, 531, 910
SsiI	CCGC	1 cut(s)	386
SspI	AATATT	1 cut(s)	288
SspMI	CTAG	3 cut(s)	212, 701, 934
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	4 cut(s)	88, 296, 641, 857
TaqI	TCGA	2 cut(s)	721, 848
TasI	AATT	7 cut(s)	106, 224, 236, 373, 397, 531, 910
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	389
TscAI	CASTG	1 cut(s)	353
TseFI	GTSAC	2 cut(s)	134, 763
Tsp45I	GTSAC	2 cut(s)	134, 763
TspDTI	ATGAA	6 cut(s)	310, 645, 750, 770, 787, 815
TspRI	CASTG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	2 cut(s)	142, 520
XmiI	GTMKAC	2 cut(s)	598, 848
XspI	CTAG	3 cut(s)	212, 701, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.