Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

5342008 .. 5342940

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG030500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAACGCAAAACACAATTTGCAGCTTCGGGTATCCGGTGTGATAAGTAATTCTCCCTTCATATTAGGGCTTGACTGTGACACGAATTGCAATGATCCAAGTTCAGCTCGGCGAGCAATGTGTTTCCACCTTGATCCCAAGCTCTCACCTTCGCTATCATTTGTTCAATTCCCTCAGAAATTCCACAACATCAGTAAGAAAGACATCTACGACAGTCAATATAGATCGATCTTTAAGGTGCTATGGCAAGGTTTGGATGGACTTCAAGGGCCAGCCATGTGCGGTACTGGCTATTACATCAAGAGGTTATCCTTGTTTGGAAAATCCCTAAAGGACGATCATAAGGACCTTATGGAACTTAGACAATCTGTTGGTCCGTCAAATGAGTTCATAACATCCCTGCTTGGAAACTACAATCCTAATATGAAAATGGCACAGCTAGCACACATAGCTGAGACCCAACAACTAGCCTCCTGTACCTATGAAGATGGCACCAAATGGGGTGAAGAGGTAAGTCCAACAACTGATGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

178

Amino Acids

19.96

Weight (kDa)

6.5

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	6 - 112	6e-27	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	491
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	2 cut(s)	89, 128
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	2 cut(s)	286, 478
AgsI	TTSAA	2 cut(s)	167, 266
AluBI	AGCT	6 cut(s)	25, 107, 142, 439, 452, 534
AluI	AGCT	6 cut(s)	25, 107, 142, 439, 452, 534
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	2 cut(s)	89, 128
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	269, 346, 374
AsuHPI	GGTGA	2 cut(s)	138, 515
AsuNHI	GCTAGC	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	346, 374
BanI	GGYRCC	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	251, 482
BciVI	GTATCC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	2 cut(s)	440, 467
BfuI	GTATCC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme18I	GGWCC	2 cut(s)	346, 374
BmgT120I	GGNCC	3 cut(s)	269, 346, 374
BmiI	GGNNCC	1 cut(s)	493
BmtI	GCTAGC	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	449
BsaWI	WCCGGW	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	2 cut(s)	97, 123
BseCI	ATCGAT	1 cut(s)	227
BseGI	GGATG	2 cut(s)	262, 395
BseMI	GCAATG	2 cut(s)	97, 123
BseMII	CTCAG	2 cut(s)	188, 444
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	449
Bsp143I	GATC	5 cut(s)	94, 133, 224, 228, 337
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	2 cut(s)	187, 445
BspDI	ATCGAT	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	89, 128
BspT107I	GGYRCC	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	449
BsrDI	GCAATG	2 cut(s)	97, 123
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	5 cut(s)	94, 133, 224, 228, 337
Bst4CI	ACNGT	2 cut(s)	77, 215
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	114, 273, 441
BstDEI	CTNAG	3 cut(s)	174, 359, 453
BstF5I	GGATG	2 cut(s)	262, 395
BstKTI	GATC	5 cut(s)	97, 136, 227, 231, 340
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	5 cut(s)	94, 133, 224, 228, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 288, 440, 449
BstV1I	GCAGC	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	271
BsuTUI	ATCGAT	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	262, 395
Cac8I	GCNNGC	3 cut(s)	114, 273, 441
Cfr13I	GGNCC	3 cut(s)	269, 346, 374
ClaI	ATCGAT	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	285, 477
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	2 cut(s)	285, 477
DdeI	CTNAG	3 cut(s)	174, 359, 453
DpnI	GATC	5 cut(s)	96, 135, 226, 230, 339
DpnII	GATC	5 cut(s)	94, 133, 224, 228, 337
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	2 cut(s)	346, 374
EcoO109I	RGGNCCY	1 cut(s)	346
FaeI	CATG	1 cut(s)	280
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	2 cut(s)	269, 382
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	2 cut(s)	440, 467
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	1 cut(s)	280
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	138, 515
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	67, 159
HpyCH4III	ACNGT	2 cut(s)	77, 215
HpyCH4V	TGCA	2 cut(s)	22, 90
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 288, 440, 449
HpyF3I	CTNAG	3 cut(s)	174, 359, 453
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	94, 133, 224, 228, 337
LpnPI	CCDG	5 cut(s)	49, 273, 285, 413, 487
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	440, 467
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	5 cut(s)	96, 135, 226, 230, 339
MboI	GATC	5 cut(s)	94, 133, 224, 228, 337
MboII	GAAGA	2 cut(s)	497, 518
MluCI	AATT	5 cut(s)	16, 49, 85, 167, 179
MnlI	CCTC	4 cut(s)	183, 297, 481, 502
MseI	TTAA	1 cut(s)	234
MspI	CCGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	4 cut(s)	113, 288, 440, 449
NdeII	GATC	5 cut(s)	94, 133, 224, 228, 337
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	493
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	493
PspPI	GGNCC	3 cut(s)	269, 346, 374
PspPPI	RGGWCCY	1 cut(s)	346
RsaI	GTAC	2 cut(s)	286, 478
RsaNI	GTAC	2 cut(s)	285, 477
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	5 cut(s)	94, 133, 224, 228, 337
Sau96I	GGNCC	3 cut(s)	269, 346, 374
SinI	GGWCC	2 cut(s)	346, 374
Sse9I	AATT	5 cut(s)	16, 49, 85, 167, 179
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	2 cut(s)	440, 467
TaaI	ACNGT	2 cut(s)	77, 215
TaqI	TCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	16, 49, 85, 167, 179
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	17, 49, 379, 440, 498
TspGWI	ACGGA	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	346, 374
XapI	RAATTY	1 cut(s)	179
XspI	CTAG	2 cut(s)	440, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.