Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

5343313 .. 5344153

Gene Structure 841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG030600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTTCCGCAGGTTTCAAATTCGTATTTTTGGATATTTTCTTTTGTACTCTTGTCATCCGTTTCGAGACATTTATACGAGGTCCTGACAACAGGAGCATCATTACAACATTGGGTCTACGAGCAAAGAATATGGATGATGAATGCAGTTACATCTCACTTATATGGTACTCTTGATGCTTTTATGAAGAAATTTGGCTGGAGGGAAGCAAGTTTCTCTATATCAAATAAAGTTGATGACATTGAGCAACTCAAGCGTTACCACGCGGGGGTATTTGATTTCCAAACCTCAGTACTTTTTCTTGTTCCATTGGCTTCACTGGTTATCTTGAACGTGGCCTCCCTTTGTGCCGGCATTGCCAGAATGATCTTTCTGGGGGAGTTGGAGAAGTTGTTTATACAAGTCTTCATACCATTTTATGCGGTGGTCATCAATTACCCTATTATAGAAGGAATGCTAATAAGGAAAGATAGTGGTCGCATTCCACCATCAGTCACCCTATTGTCTGCTATAGCTTCAATCATTTTCTGCGTCTTGGGTTCAATTATTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

185

Amino Acids

21.04

Weight (kDa)

7.8

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	3 - 179	1.9e-15	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	266
AciI	CCGC	3 cut(s)	8, 266, 422
AcsI	RAATTY	2 cut(s)	19, 191
AfaI	GTAC	3 cut(s)	48, 169, 294
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	18, 331, 519, 543
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	1 cut(s)	515
AluI	AGCT	1 cut(s)	515
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	336
ApoI	RAATTY	2 cut(s)	19, 191
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	397
BccI	CCATC	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	61
BfmI	CTRYAG	1 cut(s)	510
BmcAI	AGTACT	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmsI	GCATC	2 cut(s)	107, 166
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	236
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 377, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	56, 141
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	61
BsmI	GAATGC	3 cut(s)	148, 459, 480
BsnI	GGCC	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	366
BspACI	CCGC	3 cut(s)	8, 266, 422
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	350
BssMI	GATC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	56, 141
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 356
BstSFI	CTRYAG	1 cut(s)	510
BstUI	CGCG	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	56, 141
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	3 cut(s)	47, 168, 293
CviAII	CATG	1 cut(s)	553
CviJI	RGCY	4 cut(s)	198, 314, 338, 515
CviKI_1	RGCY	4 cut(s)	198, 314, 338, 515
CviQI	GTAC	3 cut(s)	47, 168, 293
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	82
FaeI	CATG	1 cut(s)	556
FatI	CATG	1 cut(s)	552
FauI	CCCGC	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	117
FokI	GGATG	2 cut(s)	43, 148
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	351
HgaI	GACGC	1 cut(s)	520
Hin1II	CATG	1 cut(s)	556
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	4 cut(s)	66, 85, 173, 328
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 356
HpyF3I	CTNAG	1 cut(s)	289
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	556
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	7 cut(s)	78, 98, 184, 305, 359, 364, 373
LweI	GCATC	2 cut(s)	107, 166
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	148, 257, 493
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	2 cut(s)	199, 397
MluCI	AATT	4 cut(s)	19, 191, 433, 543
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	4 cut(s)	73, 195, 298, 349
MroNI	GCCGGC	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	1 cut(s)	351
Mva1269I	GAATGC	3 cut(s)	148, 459, 480
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	253, 356
NaeI	GCCGGC	1 cut(s)	352
NdeII	GATC	1 cut(s)	366
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	1 cut(s)	556
NmuCI	GTSAC	1 cut(s)	493
PctI	GAATGC	3 cut(s)	148, 459, 480
PdiI	GCCGGC	1 cut(s)	352
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	82
PspPPI	RGGWCCY	1 cut(s)	82
RsaI	GTAC	3 cut(s)	48, 169, 294
RsaNI	GTAC	3 cut(s)	47, 168, 293
RseI	CAYNNNNRTG	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	1 cut(s)	82
ScaI	AGTACT	1 cut(s)	294
SetI	ASST	5 cut(s)	15, 84, 290, 336, 517
SfaNI	GCATC	2 cut(s)	107, 166
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	19, 191, 433, 543
SsiI	CCGC	3 cut(s)	8, 266, 422
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	65
TasI	AATT	4 cut(s)	19, 191, 433, 543
TatI	WGTACW	2 cut(s)	46, 292
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	4 cut(s)	155, 200, 397, 541
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	2 cut(s)	19, 191
XmiI	GTMKAC	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.