Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

20063940 .. 20066578

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1211900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATGAGGATGCAACTCAAGCAAATGAAGCGAAAAAATGTACCTCTTCTTATTTATGTTTCTTGTGAAAAAAGACCTTCTCAACCTCACCATTTCAAGGCTGGAGTGCTCAATGTTCTTCTACGTGTGTTGGGAGTTGTAAGCAATTCACCTTACATATTAGGTTTAGATTGTGACATGCATTGCCATGATGCAAATTCGGCACGGCAAACATTGTGTTTCCACCTTGACCCCAAGATATCACCCTCTCTAGCATTTATTAAATTCCCTCAAAATTTTCACAACATTAGTAACAACAATGATATCTATGACAGTCAGTTGAGATCAGCACTTAAGGTGCTATGGAAAGGTTATGATGGGCTTGGAGGGCCATGCGTGTCTGGTACTGGCTACTACATCAAGAGGGTGTCCTTATGTGAAACTTCCATTAGTGAAGGTAAATACAAATTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

152

Amino Acids

17.09

Weight (kDa)

9.39

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	7 - 139	1.2e-31	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	196, 263, 274, 446
AfaI	GTAC	2 cut(s)	42, 385
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	97
Alw21I	GWGCWC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	368
ApoI	RAATTY	4 cut(s)	196, 263, 274, 446
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	80, 141, 234
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	251
BfrI	CTTAAG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	368
BmsI	GCATC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	97
BsnI	GGCC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	370
BspTI	CTTAAG	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	391
BssMI	GATC	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	323
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 28, 200, 367
BstNSI	RCATGY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	41, 384
CviAII	CATG	3 cut(s)	178, 188, 372
CviJI	RGCY	4 cut(s)	101, 361, 370, 390
CviKI_1	RGCY	4 cut(s)	101, 361, 370, 390
CviQI	GTAC	2 cut(s)	41, 384
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco32I	GATATC	2 cut(s)	240, 304
EcoRV	GATATC	2 cut(s)	240, 304
EcoT22I	ATGCAT	1 cut(s)	183
FaeI	CATG	3 cut(s)	181, 191, 375
FaiI	YATR	9 cut(s)	57, 158, 179, 189, 309, 343, 354, 373, 415
FatI	CATG	3 cut(s)	177, 187, 371
FokI	GGATG	1 cut(s)	22
FspBI	CTAG	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	181, 191, 375
HphI	GGTGA	3 cut(s)	80, 141, 234
Hpy188III	TCNNGA	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	87, 428
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	13, 181, 194
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 28, 200, 367
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	181, 191, 375
Kzo9I	GATC	1 cut(s)	323
LpnPI	CCDG	3 cut(s)	87, 366, 372
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	173, 290
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MboII	GAAGA	2 cut(s)	38, 110
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	5 cut(s)	145, 196, 263, 274, 446
MnlI	CCTC	6 cut(s)	54, 96, 256, 279, 359, 396
Mph1103I	ATGCAT	1 cut(s)	183
MseI	TTAA	3 cut(s)	261, 333, 454
MslI	CAYNNNNRTG	1 cut(s)	186
MspCI	CTTAAG	1 cut(s)	332
MwoI	GCNNNNNNNGC	4 cut(s)	19, 28, 200, 367
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	181, 191, 375
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	183
NspI	RCATGY	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	368
RsaI	GTAC	2 cut(s)	42, 385
RsaNI	GTAC	2 cut(s)	41, 384
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	261, 333, 454
Sau3AI	GATC	1 cut(s)	323
Sau96I	GGNCC	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	17, 332
SmoI	CTYRAG	2 cut(s)	17, 332
Sse9I	AATT	5 cut(s)	145, 196, 263, 274, 446
SspMI	CTAG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	127
TasI	AATT	5 cut(s)	145, 196, 263, 274, 446
Tru1I	TTAA	3 cut(s)	261, 333, 454
Tru9I	TTAA	3 cut(s)	261, 333, 454
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	41
Vha464I	CTTAAG	1 cut(s)	332
XapI	RAATTY	4 cut(s)	196, 263, 274, 446
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.