Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Reverse (-)

14983666 .. 14990893

Gene Structure 7228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAACTACAAGCCCAAGAACCAGCCGAGGAGGGAGGAAGCACCAAGCAGGCGGGAGTAGTGCCAACACGCCTATCGCGACCTAATAACCGGTGGACTCCCACACCAAATCAACTACGAATCCTCGAGGGGCTTTACTATGACAAGGATCTCAAGAACCCAACTCCGAAAGCGATTCAAGAGATCTGTCTCTATCTAAAACAAGATGAATTATTTCGAGCAATATTCGTGCAAAAGCACTTTAATCACTTAGCACAATTCCACGAGAGGAAAATAAAATTTGCGGGTATATGGATGATGAAAGCAGTTACATCTCACCTATATGGTAGTCTTGATGCTTTTATGAAGAAATTTGGTTTGAGGGAAGCAAGTTTCTTCCCAACAAATAAAGTTGATGACCTTGAGCAACTCAAGCGTTACAATGCAGGGGTATTTGATTTCCAAACCTCAGCAGTTTTTCTTGTTCCTTTGGCTTCACTGGTTATCTTGAACATGGCCTCCCTTTGTGTGGGCATTGCCAGAGTGATCTTTCTGGGGGAGTTGGAGAAGTTGTTTATACAAGTCTTCATACCATTTTATGCGGTGGTCGTCAATTACCCTATTATAGAAGGAATGCTAATAAGGAAAGACAATGGTCGCATTCCACCTTCAGTCACCCTATTGTCTGCTATAGCGTCAATCATTTTCTGCGTTTTTGGGCTCAATTATTTTCATATATTACCTGTCGCTGGATGCACCATGCTAGCAGCGGCACCAAATGCCAAGTTCTTTTGCTGTGTATTTGGTAATGATCCTAAACTGGAATCCAAGACCATTTCATTAATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

276

Amino Acids

31.11

Weight (kDa)

8.96

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	97 - 232	1.3e-10	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	751
AccII	CGCG	1 cut(s)	79
AciI	CCGC	4 cut(s)	53, 284, 581, 749
AclWI	GGATC	2 cut(s)	156, 785
AcsI	RAATTY	2 cut(s)	278, 350
AcuI	CTGAAG	1 cut(s)	633
AfiI	CCNNNNNNNGG	2 cut(s)	508, 728
AgeI	ACCGGT	1 cut(s)	90
AgsI	TTSAA	2 cut(s)	179, 490
AloI	GAACNNNNNNTCC	2 cut(s)	482, 514
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	156, 785
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	2 cut(s)	278, 350
AseI	ATTAAT	1 cut(s)	821
AsiGI	ACCGGT	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	308, 646
AsuNHI	GCTAGC	1 cut(s)	742
AvaI	CYCGRG	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	702
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	556
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	743
BfmI	CTRYAG	1 cut(s)	669
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	2 cut(s)	747, 750
BlsI	GCNGC	2 cut(s)	748, 751
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	753
BmsI	GCATC	2 cut(s)	325, 722
BmtI	GCTAGC	1 cut(s)	746
BoxI	GACNNNNGTC	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	448
BpuEI	CTTGAG	3 cut(s)	137, 395, 422
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	4 cut(s)	482, 512, 536, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 728
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	483, 804
Bse3DI	GCAATG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	300, 737
BseLI	CCNNNNNNNGG	2 cut(s)	508, 728
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	483, 804
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	758
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	751
BshTI	ACCGGT	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	508, 728
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	2 cut(s)	618, 639
BsnI	GGCC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp143I	GATC	4 cut(s)	148, 183, 525, 790
Bsp68I	TCGCGA	1 cut(s)	79
BspACI	CCGC	4 cut(s)	53, 284, 581, 749
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	1 cut(s)	461
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	753
BspOI	GCTAGC	1 cut(s)	746
BspPI	GGATC	2 cut(s)	156, 785
BspT107I	GGYRCC	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	513
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	483, 804
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	4 cut(s)	148, 183, 525, 790
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	51, 744
BstDEI	CTNAG	2 cut(s)	250, 448
BstF5I	GGATG	2 cut(s)	300, 737
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	4 cut(s)	151, 186, 528, 793
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	148, 183, 525, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 758
BstPAI	GACNNNNGTC	1 cut(s)	633
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	1 cut(s)	556
BstX2I	RGATCY	2 cut(s)	148, 183
BstYI	RGATCY	2 cut(s)	148, 183
BsuRI	GGCC	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	300, 737
BtsIMutI	CAGTG	1 cut(s)	476
BtuMI	TCGCGA	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	51, 744
Cfr10I	RCCGGY	1 cut(s)	90
CseI	GACGC	1 cut(s)	663
CspAI	ACCGGT	1 cut(s)	90
CviAII	CATG	2 cut(s)	493, 739
CviJI	RGCY	6 cut(s)	14, 26, 133, 473, 497, 700
CviKI_1	RGCY	6 cut(s)	14, 26, 133, 473, 497, 700
DdeI	CTNAG	2 cut(s)	250, 448
DpnI	GATC	4 cut(s)	150, 185, 527, 792
DpnII	GATC	4 cut(s)	148, 183, 525, 790
Eco24I	GRGCYC	1 cut(s)	702
Eco57I	CTGAAG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	702
FaeI	CATG	2 cut(s)	496, 742
FatI	CATG	2 cut(s)	492, 738
FauI	CCCGC	2 cut(s)	46, 277
Fnu4HI	GCNGC	2 cut(s)	747, 750
FokI	GGATG	2 cut(s)	307, 744
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	2 cut(s)	747, 750
FspBI	CTAG	1 cut(s)	743
GluI	GCNGC	2 cut(s)	747, 750
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	91
HgaI	GACGC	1 cut(s)	663
Hin1II	CATG	2 cut(s)	496, 742
HinfI	GANTC	4 cut(s)	97, 120, 175, 803
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	2 cut(s)	308, 646
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	5 cut(s)	78, 154, 179, 332, 487
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	2 cut(s)	602, 657
HpyCH4V	TGCA	3 cut(s)	232, 425, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 758
HpyF3I	CTNAG	2 cut(s)	250, 448
Hsp92II	CATG	2 cut(s)	496, 742
Kzo9I	GATC	4 cut(s)	148, 183, 525, 790
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	2 cut(s)	325, 722
MaeI	CTAG	1 cut(s)	743
MaeIII	GTNAC	3 cut(s)	307, 416, 652
MalI	GATC	4 cut(s)	150, 185, 527, 792
MboI	GATC	4 cut(s)	148, 183, 525, 790
MboII	GAAGA	3 cut(s)	358, 367, 556
MflI	RGATCY	2 cut(s)	148, 183
MhlI	GDGCHC	1 cut(s)	702
MluCI	AATT	7 cut(s)	209, 257, 278, 350, 592, 703, 822
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	9 cut(s)	22, 25, 29, 121, 134, 261, 354, 457, 508
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	2 cut(s)	243, 821
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	1 cut(s)	91
Mva1269I	GAATGC	2 cut(s)	618, 639
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	412, 758
NdeII	GATC	4 cut(s)	148, 183, 525, 790
NheI	GCTAGC	1 cut(s)	742
NlaIII	CATG	2 cut(s)	496, 742
NlaIV	GGNNCC	1 cut(s)	753
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	652
NruI	TCGCGA	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PctI	GAATGC	2 cut(s)	618, 639
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	120, 175, 803
PinAI	ACCGGT	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	748, 751
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	633
PshBI	ATTAAT	1 cut(s)	821
PspN4I	GGNNCC	1 cut(s)	753
PspXI	VCTCGAGB	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	148, 183
RruI	TCGCGA	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	243, 821
SatI	GCNGC	2 cut(s)	747, 750
Sau3AI	GATC	4 cut(s)	148, 183, 525, 790
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	702
SetI	ASST	6 cut(s)	85, 321, 402, 449, 649, 724
SfaNI	GCATC	2 cut(s)	325, 722
SfcI	CTRYAG	1 cut(s)	669
Sfr274I	CTCGAG	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	4 cut(s)	125, 152, 401, 410
SmoI	CTYRAG	4 cut(s)	125, 152, 401, 410
Sse9I	AATT	7 cut(s)	209, 257, 278, 350, 592, 703, 822
SsiI	CCGC	4 cut(s)	53, 284, 581, 749
SspI	AATATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	743
TaqI	TCGA	2 cut(s)	126, 217
TasI	AATT	7 cut(s)	209, 257, 278, 350, 592, 703, 822
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	3 cut(s)	120, 175, 803
Tru1I	TTAA	2 cut(s)	243, 821
Tru9I	TTAA	2 cut(s)	243, 821
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	6 cut(s)	222, 314, 359, 556, 701, 807
TspRI	CASTG	1 cut(s)	483
VspI	ATTAAT	1 cut(s)	821
XapI	RAATTY	2 cut(s)	278, 350
XhoI	CTCGAG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.