Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

20067024 .. 20068045

Gene Structure 1022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1212000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCTAATGGTGATCTTCTTTTATTTGTGGCATGCAAAGCTTGGATTTCATTTACATTGCGAAGGTTGGATTTCAGTATATTGTGATCCAAAAAGGCCACAATTCTTGGGCAGTGGCACCACCAATTTGGATGAGTTTTTGGTCCAAGCGACAAGATGGTCCTCTGGCTTGGTTGATGTTGCTATCTCCAAGTTTAGTCCTCTTATATATGGCCCTCTCAAAATGCCCACTTTTCTTCACAGCATGTGTTATGCAGAACTTGCCCTTTTCCCAATTTTCTATTTCTTGTCCCTCTGGGGCTTTTGCTACCATTCCTCAACTCTGCCTACCCTCAGGGAAATGTTCACTTGCTTTATGTTCTTAAGATTGAAACTGAGCCATTTACTATGGTTGATCATGAACACATGTGTGGTCTCAAATACTTATTTCATTGTATTTTCGTTCATATTCCTATCATCTCATTCTAAACATTTATACGAGGTGCTCGCAACGGGGTCAACATTTCGACATTGGGTAAATGAGCAGAGGATATGGATGATGAAGTCAGTCACATCCCATTTATATGGTAGTGTGGATGCTTTCATGAAGAAACTTGGTATGAGAGCAGCCGGTTTTTTTCCAACGAATAAAGTGGACGACGTCGAACAACTCAAGCATTACAATATGGGAGTATTTGATTTCCAAACATCACTACTATTTCTTGCTCCAATGGTTGCCCTAGTCATCTTGAACATGGCATCGTTTGCTGTGGGGATTGCTAGAGGGATCTTTGTGGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

261

Amino Acids

29.97

Weight (kDa)

8.71

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	15 - 257	1.5e-23	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	157
AatII	GACGTC	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	116
AclWI	GGATC	2 cut(s)	80, 773
AcyI	GRCGYC	1 cut(s)	639
AflII	CTTAAG	1 cut(s)	361
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	370, 730
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	2 cut(s)	80, 773
AoxI	GGCC	2 cut(s)	95, 211
ApeKI	GCWGC	1 cut(s)	605
AspS9I	GGNCC	3 cut(s)	142, 159, 212
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	142, 159
AxyI	CCTNAGG	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	1 cut(s)	150
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	2 cut(s)	719, 759
BfrI	CTTAAG	1 cut(s)	361
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme18I	GGWCC	2 cut(s)	142, 159
BmgT120I	GGNCC	3 cut(s)	142, 159, 212
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	2 cut(s)	565, 746
BpuEI	CTTGAG	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	608
Bse21I	CCTNAGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	55
BseGI	GGATG	4 cut(s)	136, 540, 551, 580
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	346, 365
BseXI	GCAGC	1 cut(s)	617
BshFI	GGCC	2 cut(s)	97, 213
BshNI	GGYRCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	97, 213
Bso31I	GGTCTC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	12, 85, 393, 765
BspANI	GGCC	2 cut(s)	97, 213
BspCNI	CTCAG	2 cut(s)	345, 366
BspHI	TCATGA	2 cut(s)	396, 582
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	80, 773
BspT107I	GGYRCC	1 cut(s)	116
BspTI	CTTAAG	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	608
BssMI	GATC	4 cut(s)	12, 85, 393, 765
BssNI	GRCGYC	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	639
BstAFI	CTTAAG	1 cut(s)	361
BstAPI	GCANNNNNTGC	2 cut(s)	260, 743
BstC8I	GCNNGC	2 cut(s)	33, 486
BstDEI	CTNAG	2 cut(s)	332, 374
BstF5I	GGATG	4 cut(s)	136, 540, 551, 580
BstKTI	GATC	4 cut(s)	15, 88, 396, 768
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	4 cut(s)	12, 85, 393, 765
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 260, 743
BstNSI	RCATGY	3 cut(s)	35, 247, 408
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	765
BstXI	CCANNNNNNTGG	2 cut(s)	127, 563
BstYI	RGATCY	1 cut(s)	765
Bsu36I	CCTNAGG	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	97, 213
BtsCI	GGATG	4 cut(s)	136, 540, 551, 580
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	33, 486
CciI	TCATGA	2 cut(s)	396, 582
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	3 cut(s)	142, 159, 212
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	6 cut(s)	32, 244, 397, 405, 583, 733
CviJI	RGCY	7 cut(s)	40, 97, 168, 213, 300, 378, 608
CviKI_1	RGCY	7 cut(s)	40, 97, 168, 213, 300, 378, 608
DdeI	CTNAG	2 cut(s)	332, 374
DpnI	GATC	4 cut(s)	14, 87, 395, 767
DpnII	GATC	4 cut(s)	12, 85, 393, 765
DrdI	GACNNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	142, 159
Eco81I	CCTNAGG	1 cut(s)	332
FaeI	CATG	6 cut(s)	35, 247, 400, 408, 586, 736
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	6 cut(s)	31, 243, 396, 404, 582, 732
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	4 cut(s)	143, 538, 547, 587
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	719, 759
GluI	GCNGC	1 cut(s)	606
HaeIII	GGCC	2 cut(s)	97, 213
HapII	CCGG	1 cut(s)	609
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	6 cut(s)	35, 247, 400, 408, 586, 736
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	38
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	345, 498, 634
Hpy188III	TCNNGA	3 cut(s)	397, 583, 727
Hpy8I	GTNNAC	3 cut(s)	345, 498, 634
Hpy99I	CGWCG	2 cut(s)	641, 644
HpyAV	CCTTC	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	2 cut(s)	35, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 260, 743
HpyF3I	CTNAG	2 cut(s)	332, 374
HpySE526I	ACGT	1 cut(s)	639
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	6 cut(s)	35, 247, 400, 408, 586, 736
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	4 cut(s)	12, 85, 393, 765
LmnI	GCTCC	1 cut(s)	709
LpnPI	CCDG	4 cut(s)	150, 280, 319, 622
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	565, 746
MaeI	CTAG	2 cut(s)	719, 759
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	4 cut(s)	14, 87, 395, 767
MboI	GATC	4 cut(s)	12, 85, 393, 765
MboII	GAAGA	3 cut(s)	7, 227, 598
MflI	RGATCY	1 cut(s)	765
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	3 cut(s)	101, 124, 273
MmeI	TCCRAC	2 cut(s)	47, 644
MnlI	CCTC	9 cut(s)	172, 210, 225, 302, 325, 341, 472, 519, 755
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	2 cut(s)	407, 561
MspCI	CTTAAG	1 cut(s)	361
MspI	CCGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	3 cut(s)	37, 260, 743
NdeII	GATC	4 cut(s)	12, 85, 393, 765
NlaIII	CATG	6 cut(s)	35, 247, 400, 408, 586, 736
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	3 cut(s)	35, 247, 408
OliI	CACNNNNGTG	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	35
PagI	TCATGA	2 cut(s)	396, 582
PciI	ACATGT	1 cut(s)	404
PflFI	GACNNNGTC	1 cut(s)	638
PkrI	GCNGC	1 cut(s)	607
PscI	ACATGT	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	3 cut(s)	142, 159, 212
PsuI	RGATCY	1 cut(s)	765
PsyI	GACNNNGTC	1 cut(s)	638
RseI	CAYNNNNRTG	2 cut(s)	407, 561
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	4 cut(s)	12, 85, 393, 765
Sau96I	GGNCC	3 cut(s)	142, 159, 212
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	4 cut(s)	42, 67, 483, 642
SfaNI	GCATC	2 cut(s)	565, 746
SinI	GGWCC	2 cut(s)	142, 159
SmiMI	CAYNNNNRTG	2 cut(s)	407, 561
SmlI	CTYRAG	2 cut(s)	361, 650
SmoI	CTYRAG	2 cut(s)	361, 650
SphI	GCATGC	1 cut(s)	35
Sse9I	AATT	3 cut(s)	101, 124, 273
SspMI	CTAG	2 cut(s)	719, 759
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	2 cut(s)	505, 642
TasI	AATT	3 cut(s)	101, 124, 273
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	7 cut(s)	38, 413, 418, 433, 554, 571, 599
TspRI	CASTG	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	638
Vha464I	CTTAAG	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	142, 159
XceI	RCATGY	3 cut(s)	35, 247, 408
XspI	CTAG	2 cut(s)	719, 759
ZraI	GACGTC	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.