Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Reverse (-)

14020441 .. 14021749

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCAGTTTGGTTTCTTATACGGTTCAGTGGTGGAAGATTACTTCACAGGGCCACAATTCTTGGGTAGTGGCACCACCAATTTGGATGAGTTTTTGGTCCAAGGGACAAGGTGGTCCTCTGGCTTGGTTGGTGTTGCTATCTCCAAGTTTAGTCCTCTTATATATGGCCCTTTAAAAACGCCCACTTTTCTTCACAGCAAGTGTTATGCAGAACTTGCCCTTTTCCCCATTTTCTATTTCTTGTCGCTCTGGGGCTTTGCTACCATTCCTCAACTTTGCCTACTCAATGGCATTCCCTTATACCCTCTCAGGATATGGATGATGAAGTCAGTCACATCCCACGTACTTGGTAGTGTGGATGCTTTCATGGAGAAACTTGGTATGAGAGAAGCCAGTTTTTTTCCAAAGAATAAAGTCGACGACGTCGAACAACTCAAGCGTTATAATATGGGAGTATTTGATTTCCAAACATCACTACTATTTCTTGCTCCAATGGTTGCCCTAGTCATCTTGAACTTGGCATCGTTTGCTGTGGGGATTGCTAGAGGGATCTTTGTGGGGGAGTTGGACAAGATGTTCATACAAGTTTTCATACCCTTCTATGTCATAGTAATGAACTACCCTATCATTGAAGGAATGCTTATAAGGAAAGACAAAGGAAGCATTCCACTATCTGTTACCCTACTATCCGCCTTAGTTTCCCTAATTTTCTATTTTTTTGGTTCTATTATTTCATGTAGCAAGGCCATGGCCTATATATGTGTCCGTTATATACATACATTTTTGCTATTAAATGTAGGGGTGTCTAAAAGATGTACTCCGTTTTTTCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

279

Amino Acids

31.21

Weight (kDa)

8.89

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	444, 644
AasI	GACNNNNNNGTC	1 cut(s)	112
AatII	GACGTC	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	1 cut(s)	690
AclWI	GGATC	1 cut(s)	557
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	2 cut(s)	345, 817
AgsI	TTSAA	2 cut(s)	514, 632
AloI	GAACNNNNNNTCC	2 cut(s)	560, 592
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	4 cut(s)	50, 166, 744, 750
AspS9I	GGNCC	4 cut(s)	50, 97, 114, 167
AvaII	GGWCC	2 cut(s)	97, 114
BanI	GGYRCC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	503, 543
Bme18I	GGWCC	2 cut(s)	97, 114
BmgT120I	GGNCC	4 cut(s)	50, 97, 114, 167
BmiI	GGNNCC	1 cut(s)	73
BmsI	GCATC	2 cut(s)	349, 530
BpuEI	CTTGAG	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	100, 747
Bse1I	ACTGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	100, 747
BseGI	GGATG	4 cut(s)	91, 324, 335, 364
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	393
BshFI	GGCC	4 cut(s)	52, 168, 746, 752
BshNI	GGYRCC	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	3 cut(s)	291, 642, 663
BsnI	GGCC	4 cut(s)	52, 168, 746, 752
Bsp143I	GATC	1 cut(s)	549
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	4 cut(s)	52, 168, 746, 752
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	100, 747
BssMI	GATC	1 cut(s)	549
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	100, 747
Bst4CI	ACNGT	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	423
BstAPI	GCANNNNNTGC	2 cut(s)	215, 527
BstBAI	YACGTR	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	308, 694
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	4 cut(s)	91, 324, 335, 364
BstKTI	GATC	1 cut(s)	552
BstMBI	GATC	1 cut(s)	549
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 527
BstX2I	RGATCY	1 cut(s)	549
BstXI	CCANNNNNNTGG	2 cut(s)	82, 347
BstYI	RGATCY	1 cut(s)	549
BsuRI	GGCC	4 cut(s)	52, 168, 746, 752
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	4 cut(s)	91, 324, 335, 364
BtsIMutI	CAGTG	1 cut(s)	33
Cfr13I	GGNCC	4 cut(s)	50, 97, 114, 167
Csp6I	GTAC	2 cut(s)	344, 816
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	3 cut(s)	367, 735, 748
CviJI	RGCY	7 cut(s)	52, 123, 168, 255, 392, 746, 752
CviKI_1	RGCY	7 cut(s)	52, 123, 168, 255, 392, 746, 752
CviQI	GTAC	2 cut(s)	344, 816
DdeI	CTNAG	2 cut(s)	308, 694
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
DraI	TTTAAA	1 cut(s)	174
DrdI	GACNNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	112
EciI	GGCGGA	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	100, 747
Eco47I	GGWCC	2 cut(s)	97, 114
EcoT14I	CCWWGG	2 cut(s)	100, 747
ErhI	CCWWGG	2 cut(s)	100, 747
FaeI	CATG	3 cut(s)	370, 738, 751
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	3 cut(s)	366, 734, 747
FblI	GTMKAC	1 cut(s)	417
FokI	GGATG	4 cut(s)	98, 322, 331, 371
FspBI	CTAG	2 cut(s)	503, 543
HaeIII	GGCC	4 cut(s)	52, 168, 746, 752
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	3 cut(s)	370, 738, 751
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188III	TCNNGA	2 cut(s)	310, 511
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	3 cut(s)	422, 425, 428
HpyAV	CCTTC	2 cut(s)	607, 626
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	2 cut(s)	342, 423
HpyCH4V	TGCA	2 cut(s)	4, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 527
HpyF3I	CTNAG	2 cut(s)	308, 694
HpySE526I	ACGT	2 cut(s)	342, 423
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	3 cut(s)	370, 738, 751
Kzo9I	GATC	1 cut(s)	549
LmnI	GCTCC	1 cut(s)	493
LpnPI	CCDG	5 cut(s)	33, 105, 235, 295, 406
LweI	GCATC	2 cut(s)	349, 530
MaeI	CTAG	2 cut(s)	503, 543
MaeII	ACGT	2 cut(s)	342, 423
MaeIII	GTNAC	2 cut(s)	331, 676
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MboII	GAAGA	2 cut(s)	47, 182
MflI	RGATCY	1 cut(s)	549
MluCI	AATT	3 cut(s)	56, 79, 705
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	5 cut(s)	127, 165, 279, 315, 539
MseI	TTAA	2 cut(s)	173, 791
MslI	CAYNNNNRTG	1 cut(s)	611
Mva1269I	GAATGC	3 cut(s)	291, 642, 663
MwoI	GCNNNNNNNGC	2 cut(s)	215, 527
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	1 cut(s)	549
NlaIII	CATG	3 cut(s)	370, 738, 751
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	3 cut(s)	291, 642, 663
PflFI	GACNNNGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	343
PsiI	TTATAA	2 cut(s)	444, 644
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	4 cut(s)	50, 97, 114, 167
PsuI	RGATCY	1 cut(s)	549
PsyI	GACNNNGTC	1 cut(s)	422
RsaI	GTAC	2 cut(s)	345, 817
RsaNI	GTAC	2 cut(s)	344, 816
RseI	CAYNNNNRTG	1 cut(s)	611
SalI	GTCGAC	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	173, 791
Sau3AI	GATC	1 cut(s)	549
Sau96I	GGNCC	4 cut(s)	50, 97, 114, 167
SetI	ASST	3 cut(s)	113, 345, 426
SfaNI	GCATC	2 cut(s)	349, 530
SinI	GGWCC	2 cut(s)	97, 114
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	56, 79, 705
SsiI	CCGC	1 cut(s)	690
SspMI	CTAG	2 cut(s)	503, 543
StyI	CCWWGG	2 cut(s)	100, 747
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	2 cut(s)	345, 426
TaqI	TCGA	2 cut(s)	417, 426
TasI	AATT	3 cut(s)	56, 79, 705
TatI	WGTACW	1 cut(s)	815
Tru1I	TTAA	2 cut(s)	173, 791
Tru9I	TTAA	2 cut(s)	173, 791
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	6 cut(s)	338, 355, 568, 580, 629, 723
TspGWI	ACGGA	2 cut(s)	755, 810
TspRI	CASTG	1 cut(s)	33
Tth111I	GACNNNGTC	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	97, 114
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	2 cut(s)	503, 543
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.