Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Reverse (-)

14995437 .. 14995909

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCACAGCTAGGTGAGACCCAACAGCTAGCCTCCTGTACCTATGAAGATGGCACCAAATGGGGTGAAGAGACCAGTTTCTCTAATCTATGGCAAGCTGTTTTCTTATACGCGTCTATTGCGGAAGATTATTTCACAGCGTTCGCTAGCTTGCATTGCAAGGGTTGGAATTCAGTGTATTGCAATCCACCAAGGCCTCAGTTCTTGGGCAGTGGCACCACTAATTTGAATGACGTTTTGGTCCAAGGGACAAGAGTGAGTTCTGGGTTCGTTGATGTTGCCATCTCCAAATACTGCCCTCTTATATATGGTCTTTCTAAAATGTCTTTCCTTGAAAGTATGTGCTATGGTTGGGTAGCAATTTTCCCTATTTGCCGGTTCTTCTCAATTTGGTGCCTTGCAACTATTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

137

Amino Acids

15.31

Weight (kDa)

4.91

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	4 - 130	6e-25	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AccB1I	GGYRCC	3 cut(s)	53, 215, 393
AccII	CGCG	1 cut(s)	113
AciI	CCGC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	229, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	4 cut(s)	10, 28, 98, 150
AluI	AGCT	4 cut(s)	10, 28, 98, 150
Alw26I	GTCTC	2 cut(s)	11, 65
AoxI	GGCC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	26, 77
AsuNHI	GCTAGC	2 cut(s)	28, 146
AvaII	GGWCC	1 cut(s)	241
BanI	GGYRCC	3 cut(s)	53, 215, 393
BccI	CCATC	2 cut(s)	44, 290
BcoDI	GTCTC	2 cut(s)	11, 65
BfaI	CTAG	3 cut(s)	11, 29, 147
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	3 cut(s)	55, 217, 395
BmtI	GCTAGC	2 cut(s)	32, 150
BsaI	GGTCTC	2 cut(s)	11, 65
BsaJI	CCNNGG	2 cut(s)	191, 244
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	191, 244
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	196
BshNI	GGYRCC	3 cut(s)	53, 215, 393
BsiSI	CCGG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	11, 65
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	2 cut(s)	11, 65
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	3 cut(s)	55, 217, 395
BspOI	GCTAGC	2 cut(s)	32, 150
BspT107I	GGYRCC	3 cut(s)	53, 215, 393
BspTNI	GGTCTC	2 cut(s)	11, 65
BsrDI	GCAATG	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	191, 244
BssT1I	CCWWGG	2 cut(s)	191, 244
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	4 cut(s)	30, 96, 148, 152
BstDEI	CTNAG	2 cut(s)	198, 411
BstFNI	CGCG	1 cut(s)	113
BstMAI	GTCTC	2 cut(s)	11, 65
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 156
BstUI	CGCG	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	180, 217
Cac8I	GCNNGC	4 cut(s)	30, 96, 148, 152
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	39
CviJI	RGCY	6 cut(s)	10, 28, 32, 98, 150, 196
CviKI_1	RGCY	6 cut(s)	10, 28, 32, 98, 150, 196
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	2 cut(s)	198, 411
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	191, 244
Eco147I	AGGCCT	1 cut(s)	196
Eco31I	GGTCTC	2 cut(s)	11, 65
Eco47I	GGWCC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	191, 244
ErhI	CCWWGG	2 cut(s)	191, 244
FaiI	YATR	8 cut(s)	45, 91, 109, 305, 307, 309, 341, 348
FaqI	GGGAC	1 cut(s)	262
FspBI	CTAG	3 cut(s)	11, 29, 147
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	1 cut(s)	102
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	2 cut(s)	26, 77
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	154, 159, 183, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 156
HpyF3I	CTNAG	2 cut(s)	198, 411
HpySE526I	ACGT	1 cut(s)	234
LpnPI	CCDG	4 cut(s)	49, 88, 249, 389
MaeI	CTAG	3 cut(s)	11, 29, 147
MaeII	ACGT	1 cut(s)	234
MboII	GAAGA	4 cut(s)	59, 80, 137, 373
MluCI	AATT	4 cut(s)	169, 223, 360, 387
MluI	ACGCGT	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	43, 207, 309
MspI	CCGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	119, 156
NheI	GCTAGC	2 cut(s)	28, 146
NlaIV	GGNNCC	3 cut(s)	55, 217, 395
PceI	AGGCCT	1 cut(s)	196
PspN4I	GGNNCC	3 cut(s)	55, 217, 395
PspPI	GGNCC	1 cut(s)	241
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	241
SetI	ASST	7 cut(s)	12, 16, 30, 44, 100, 152, 237
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	4 cut(s)	169, 223, 360, 387
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	3 cut(s)	11, 29, 147
StuI	AGGCCT	1 cut(s)	196
StyI	CCWWGG	2 cut(s)	191, 244
TaiI	ACGT	1 cut(s)	237
TasI	AATT	4 cut(s)	169, 223, 360, 387
TscAI	CASTG	2 cut(s)	180, 217
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	180, 217
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	169
XspI	CTAG	3 cut(s)	11, 29, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.