Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

5340070 .. 5340804

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG030300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGATCAGACTTCTAATGCCCCTCTGCATCTCTGCCATGTCAACAGGCTCACAATTTTCATCAATCGAACGTATGCAGTCATACACTCCATCGCTTTATCATTCCTGCTTTATTATCGAGCCTCTTTCTTCTTCCAGGACACCAAAACACCCATCTTTCCATCTCTTATTGTCTTTGCGGCCGAGCTCCTCTTTTCCTTCGAATGGCTTCTAACCCAGGCATATCGGTGGAGGCCCGTCTCTCGAACTACGTTCCCGGAGAGATTGCCGGAAGATGACAAACTTCCTGCAATCGACGTGTTCATCTGCACCGCTGATCCTGATCTGGAGCCAACCGTGGCGGTGATGAACACTGTAATATCAGCCATGGCACTCGACTATCCACCCGAGAAGCTTCACGTGTATTTGTCAGATGATGCCGGCGCTGATGTGACTCTGAATGGTATGAGAGAGGCTTGGACGTTTGCAAAGCGGTGGATTCCATTTTGTAAGAGGTATAAGATCAAGTGCAGGTCTCCAAAAGCCTATTTCTCAGCAGCAAAGGATGAGAATGAAGATGGTGATTTTGGGGGTACTGATTTCATACAAGAGAGGCAAATTGTTCAGGTTATAAACATGATCCGAATTAATTTTGTGACAGACATGCAATTTAGTGAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

220

Amino Acids

25.48

Weight (kDa)

5.39

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	98 - 202	2.5e-28	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	501
AciI	CCGC	4 cut(s)	179, 312, 341, 472
AclWI	GGATC	3 cut(s)	12, 311, 613
AcoI	YGGCCR	1 cut(s)	180
AcvI	CACGTG	1 cut(s)	400
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	1 cut(s)	204
AflIII	ACRYGT	2 cut(s)	297, 399
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	135, 216
AluBI	AGCT	2 cut(s)	187, 394
AluI	AGCT	2 cut(s)	187, 394
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	2 cut(s)	244, 519
AlwI	GGATC	3 cut(s)	12, 311, 613
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	180, 233
ApeKI	GCWGC	1 cut(s)	536
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	355, 572
AsuII	TTCGAA	1 cut(s)	201
AvaI	CYCGRG	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	189
BbrPI	CACGTG	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	4 cut(s)	98, 161, 169, 551
BciT130I	CCWGG	2 cut(s)	137, 218
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	244, 519
BfaI	CTAG	1 cut(s)	661
BfoI	RGCGCY	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	501
BisI	GCNGC	2 cut(s)	180, 537
BlsI	GCNGC	2 cut(s)	181, 538
Bme1390I	CCNGG	3 cut(s)	137, 218, 257
BmeT110I	CYCGRG	1 cut(s)	386
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	3 cut(s)	137, 218, 257
BmsI	GCATC	2 cut(s)	37, 406
BpmI	CTGGAG	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	519
BsaJI	CCNNGG	3 cut(s)	216, 336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	137, 218
BseDI	CCNNGG	3 cut(s)	216, 336, 366
BseGI	GGATG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	179
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	548
BsgI	GTGCAG	2 cut(s)	292, 529
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	182, 235
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	3 cut(s)	257, 269, 420
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	244, 519
BsmBI	CGTCTC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	182, 235
Bso31I	GGTCTC	1 cut(s)	519
BsoBI	CYCGRG	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	5 cut(s)	4, 316, 322, 501, 618
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	4 cut(s)	179, 312, 341, 472
BspANI	GGCC	2 cut(s)	182, 235
BspCNI	CTCAG	1 cut(s)	545
BspLI	GGNNCC	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	501
BspPI	GGATC	3 cut(s)	12, 311, 613
BspT104I	TTCGAA	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	216, 336, 366
BssMI	GATC	5 cut(s)	4, 316, 322, 501, 618
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	137, 218
Bst4CI	ACNGT	2 cut(s)	337, 355
BstBAI	YACGTR	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	532
BstDSI	CCRYGG	2 cut(s)	336, 366
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	5 cut(s)	7, 319, 325, 504, 621
BstMAI	GTCTC	2 cut(s)	244, 519
BstMBI	GATC	5 cut(s)	4, 316, 322, 501, 618
BstMCI	CGRYCG	1 cut(s)	183
BstNI	CCWGG	2 cut(s)	137, 218
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	3 cut(s)	135, 216, 255
BstV1I	GCAGC	1 cut(s)	548
BstZI	CGGCCG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	182, 235
BtgI	CCRYGG	2 cut(s)	336, 366
BtgZI	GCGATG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	4 cut(s)	38, 367, 616, 643
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	1 cut(s)	532
DpnI	GATC	5 cut(s)	6, 318, 324, 503, 620
DpnII	GATC	5 cut(s)	4, 316, 322, 501, 618
EaeI	YGGCCR	1 cut(s)	180
EagI	CGGCCG	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	519
Eco52I	CGGCCG	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	187
Eco72I	CACGTG	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	135, 216
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	4 cut(s)	41, 370, 619, 646
FatI	CATG	4 cut(s)	37, 366, 615, 642
Fnu4HI	GCNGC	2 cut(s)	180, 537
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	180, 537
FspBI	CTAG	1 cut(s)	661
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	2 cut(s)	180, 537
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	182, 235
HapII	CCGG	3 cut(s)	257, 269, 420
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	4 cut(s)	41, 370, 619, 646
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	2 cut(s)	433, 478
HpaII	CCGG	3 cut(s)	257, 269, 420
HphI	GGTGA	2 cut(s)	355, 572
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	4 cut(s)	9, 412, 438, 623
Hpy188III	TCNNGA	3 cut(s)	243, 320, 326
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	337, 355
HpyCH4IV	ACGT	5 cut(s)	71, 251, 297, 399, 461
HpyCH4V	TGCA	7 cut(s)	28, 77, 290, 309, 467, 510, 646
HpyF3I	CTNAG	1 cut(s)	532
HpySE526I	ACGT	5 cut(s)	71, 251, 297, 399, 461
Hsp92II	CATG	4 cut(s)	41, 370, 619, 646
HspAI	GCGC	1 cut(s)	423
KroI	GCCGGC	1 cut(s)	419
KroNI	GCCGGC	1 cut(s)	421
Kzo9I	GATC	5 cut(s)	4, 316, 322, 501, 618
LmnI	GCTCC	2 cut(s)	192, 328
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	2 cut(s)	37, 406
MaeI	CTAG	1 cut(s)	661
MaeII	ACGT	5 cut(s)	71, 251, 297, 399, 461
MaeIII	GTNAC	2 cut(s)	430, 634
MalI	GATC	5 cut(s)	6, 318, 324, 503, 620
MboI	GATC	5 cut(s)	4, 316, 322, 501, 618
MboII	GAAGA	4 cut(s)	121, 124, 284, 566
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	5 cut(s)	54, 597, 624, 628, 647
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	7 cut(s)	33, 133, 200, 225, 445, 486, 585
MroNI	GCCGGC	1 cut(s)	419
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	226
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	3 cut(s)	257, 269, 420
MspR9I	CCNGG	3 cut(s)	137, 218, 257
MvaI	CCWGG	2 cut(s)	137, 218
NaeI	GCCGGC	1 cut(s)	421
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	5 cut(s)	4, 316, 322, 501, 618
NgoMIV	GCCGGC	1 cut(s)	419
NlaIII	CATG	4 cut(s)	41, 370, 619, 646
NlaIV	GGNNCC	1 cut(s)	330
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	430, 634
NspI	RCATGY	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	478
PfoI	TCCNGGA	2 cut(s)	135, 255
PkrI	GCNGC	2 cut(s)	181, 538
PleI	GAGTC	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	427
Ppu21I	YACGTR	1 cut(s)	400
PshBI	ATTAAT	1 cut(s)	627
PsiI	TTATAA	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	135, 216
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	2 cut(s)	135, 216
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	234
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
RseI	CAYNNNNRTG	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	2 cut(s)	180, 537
Sau3AI	GATC	5 cut(s)	4, 316, 322, 501, 618
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	3 cut(s)	137, 218, 257
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	37, 406
SfuI	TTCGAA	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	226
Sse9I	AATT	5 cut(s)	54, 597, 624, 628, 647
SsiI	CCGC	4 cut(s)	179, 312, 341, 472
SspMI	CTAG	1 cut(s)	661
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	3 cut(s)	135, 216, 255
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	337, 355
TaiI	ACGT	5 cut(s)	74, 254, 300, 402, 464
TaqI	TCGA	6 cut(s)	67, 118, 201, 244, 294, 375
TasI	AATT	5 cut(s)	54, 597, 624, 628, 647
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	430, 634
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	2 cut(s)	430, 634
TspDTI	ATGAA	5 cut(s)	49, 292, 362, 567, 571
TspRI	CASTG	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	627
XceI	RCATGY	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.