Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Reverse (-)

12355444 .. 12356040

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G089900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGAGTTCTTCTAAGCTACCCCTTAATCTCTGCCATGTCCACAAACTTTCAATCGTCATCAACCGGACACATATATTCTTCCACTCTATAGCTTTAGTCTTCTTGCTTTACTACAGAGCTTTTTTCTTCTTCTTCCAAGACTCTACCAAAACCAAAGCAACCACCATAGCATGGCTTCTTGTGTTTGTCTCAGAAATCCTCCTATTCTTCGAGTGGCTCCTCGGCCAGTCTTCTCGGTGGCGTCCCGTTTCGCGAACCGCGTTCCCGGAGAGGCTGCCTGCCAATGATAAGCTCCCGGCTGTTGATGTGTTCATCTGCACTGCGGATCCGGAGAAGGAACCGACTGTGGGGGTGATGAACACTGTGTTATCTGCCATGGCAATGGACTATCCGCCAGAGAAACTTCATGTGTATCTGTCCGATGATGGTGGTGCTGCTGTGACTTTGAAGGAAGAGGAAGATGCTGATTTTGGCGGCAGCAAGTTCATTCAAGACAGAGAAGATATTAAGGAGAAATATGAGGCGTTCAAGAAAAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

182

Amino Acids

20.78

Weight (kDa)

6.21

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	174
AccII	CGCG	2 cut(s)	256, 263
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	4 cut(s)	261, 326, 395, 477
AclWI	GGATC	2 cut(s)	323, 336
AcoI	YGGCCR	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	174, 350
AgsI	TTSAA	4 cut(s)	54, 451, 494, 532
AluBI	AGCT	4 cut(s)	19, 95, 122, 295
AluI	AGCT	4 cut(s)	19, 95, 122, 295
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	323, 336
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	277, 437, 480
AsuC2I	CCSGG	2 cut(s)	269, 299
AsuHPI	GGTGA	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	328
BbsI	GAAGAC	2 cut(s)	94, 225
BbvI	GCAGC	3 cut(s)	264, 424, 492
BccI	CCATC	1 cut(s)	422
BcnI	CCSGG	2 cut(s)	269, 299
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	2 cut(s)	90, 115
BisI	GCNGC	4 cut(s)	278, 438, 478, 481
BlsI	GCNGC	4 cut(s)	279, 439, 479, 482
Bme1390I	CCNGG	2 cut(s)	269, 299
BmiI	GGNNCC	3 cut(s)	221, 330, 342
BmrFI	CCNGG	2 cut(s)	269, 299
BmsI	GCATC	1 cut(s)	454
BpiI	GAAGAC	2 cut(s)	94, 225
BpuMI	CCSGG	2 cut(s)	269, 299
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	223, 378
BsaWI	WCCGGW	2 cut(s)	66, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 350
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	223, 378
BseLI	CCNNNNNNNGG	2 cut(s)	174, 350
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	264, 424, 492
BsgI	GTGCAG	1 cut(s)	304
Bsh1236I	CGCG	2 cut(s)	256, 263
BshFI	GGCC	1 cut(s)	228
BsiSI	CCGG	4 cut(s)	67, 269, 299, 332
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	174, 350
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	228
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	378
Bsp68I	TCGCGA	1 cut(s)	256
BspACI	CCGC	4 cut(s)	261, 326, 395, 477
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	331
BspFNI	CGCG	2 cut(s)	256, 263
BspLI	GGNNCC	3 cut(s)	221, 330, 342
BspPI	GGATC	2 cut(s)	323, 336
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	223, 378
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	349, 367
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	15, 193
BstDSI	CCRYGG	1 cut(s)	378
BstFNI	CGCG	2 cut(s)	256, 263
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	267, 297
BstSFI	CTRYAG	2 cut(s)	90, 115
BstUI	CGCG	2 cut(s)	256, 263
BstV1I	GCAGC	3 cut(s)	264, 424, 492
BstV2I	GAAGAC	2 cut(s)	94, 225
BstX2I	RGATCY	1 cut(s)	328
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	378
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	321, 363
BtuMI	TCGCGA	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	282
CseI	GACGC	1 cut(s)	233
CviAII	CATG	4 cut(s)	38, 174, 379, 410
CviJI	RGCY	9 cut(s)	19, 95, 122, 178, 220, 228, 277, 295, 302
CviKI_1	RGCY	9 cut(s)	19, 95, 122, 178, 220, 228, 277, 295, 302
DdeI	CTNAG	2 cut(s)	15, 193
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	4 cut(s)	41, 177, 382, 413
FaiI	YATR	9 cut(s)	39, 75, 77, 92, 170, 175, 380, 411, 522
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	4 cut(s)	37, 173, 378, 409
Fnu4HI	GCNGC	4 cut(s)	278, 438, 478, 481
Fsp4HI	GCNGC	4 cut(s)	278, 438, 478, 481
GluI	GCNGC	4 cut(s)	278, 438, 478, 481
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	4 cut(s)	67, 269, 299, 332
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	41, 177, 382, 413
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	4 cut(s)	67, 269, 299, 332
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	196, 424
Hpy188III	TCNNGA	4 cut(s)	255, 332, 494, 532
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	331, 445
HpyCH4III	ACNGT	2 cut(s)	349, 367
HpyCH4V	TGCA	1 cut(s)	321
HpyF3I	CTNAG	2 cut(s)	15, 193
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	41, 177, 382, 413
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	225, 300
LpnPI	CCDG	7 cut(s)	80, 242, 282, 294, 312, 345, 411
Lsp1109I	GCAGC	3 cut(s)	264, 424, 492
LweI	GCATC	1 cut(s)	454
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MflI	RGATCY	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	212, 233, 267, 451, 517
MroI	TCCGGA	1 cut(s)	331
MseI	TTAA	2 cut(s)	27, 510
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	4 cut(s)	67, 269, 299, 332
MspR9I	CCNGG	2 cut(s)	269, 299
MvnI	CGCG	2 cut(s)	256, 263
NciI	CCSGG	2 cut(s)	269, 299
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	4 cut(s)	41, 177, 382, 413
NlaIV	GGNNCC	3 cut(s)	221, 330, 342
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	442
NruI	TCGCGA	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	174
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	279, 439, 479, 482
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PspN4I	GGNNCC	3 cut(s)	221, 330, 342
PsuI	RGATCY	1 cut(s)	328
RruI	TCGCGA	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	27, 510
SatI	GCNGC	4 cut(s)	278, 438, 478, 481
Sau3AI	GATC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	269, 299
SetI	ASST	4 cut(s)	21, 97, 124, 297
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	2 cut(s)	90, 115
SmiMI	CAYNNNNRTG	1 cut(s)	383
SsiI	CCGC	4 cut(s)	261, 326, 395, 477
StyD4I	CCNGG	2 cut(s)	267, 297
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	349, 367
TaqI	TCGA	1 cut(s)	213
TauI	GCSGC	1 cut(s)	480
Tru1I	TTAA	2 cut(s)	27, 510
Tru9I	TTAA	2 cut(s)	27, 510
TscAI	CASTG	2 cut(s)	328, 370
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	277, 437, 480
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	304, 374, 398, 478
TspRI	CASTG	2 cut(s)	328, 370
Van91I	CCANNNNNTGG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.