Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020388.1

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1875

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020388.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

gaaaaatatgaggtgtttaaggaaagagtgagagaatacgcaaggcatggtgacactgggagcagtaagcgtctagatcattctgcagtgattgaggtgatacaagatagttctagtaatcatgcatttgaagaaaatgaggcaaaaaacatgcctctccttgtttatgtgtctcgcgagaaaagaccttctcatgctcatcatttcaaggctggagctctcaatgttctgcttcgagtatccggtgtgatcagtaattctcccttcatattagggcttgattgtgacatgtattgcaatgatccaagttcagctcggcaagcaatgtgtttccaccttgatccccagctctcgcctacgctagcacttgtgcaattccctcagaaattccacaacatcagtaagaatgacatctacgacaatcataaggatcttatggaacttagaacatttgttggtccatcaagtgagttcataaaatccctgcttggaaactacaatcctaatatgaaaatggcacagctagctgagacccaacaactagcctcctgtacctatgaagatggcaccaaatggggtgaagaggctggtttcttatacgcgtctgtagtggatgattatttcacagggttcgctagcttgcattgcaagggttggaattcagtgtattgcaatccgccaaagcctcagttcttgggcagtggcactactaatttgaatgactttttggtccaagggacaagatggagttctggcaattttccctatttgtcggttcttcacactctgttgccttgcaactatacctcagcttggcctagtcaacggcatttccctgtaccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

281

Amino Acids

31.71

Weight (kDa)

6.32

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	566
AccII	CGCG	2 cut(s)	177, 602
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	3 cut(s)	296, 335, 438
AcsI	RAATTY	2 cut(s)	386, 658
AfaI	GTAC	2 cut(s)	553, 840
AfiI	CCNNNNNNNGG	1 cut(s)	813
AflIII	ACRYGT	2 cut(s)	288, 600
AgsI	TTSAA	3 cut(s)	131, 208, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	710, 742
AluBI	AGCT	7 cut(s)	218, 314, 349, 523, 527, 639, 812
AluI	AGCT	7 cut(s)	218, 314, 349, 523, 527, 639, 812
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	2 cut(s)	177, 524
AlwI	GGATC	3 cut(s)	296, 335, 438
AoxI	GGCC	1 cut(s)	815
ApoI	RAATTY	2 cut(s)	386, 658
AspS9I	GGNCC	2 cut(s)	458, 730
AsuHPI	GGTGA	3 cut(s)	62, 109, 590
AsuNHI	GCTAGC	3 cut(s)	361, 523, 635
AvaII	GGWCC	2 cut(s)	458, 730
BanI	GGYRCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	220
BbvCI	CCTCAGC	1 cut(s)	808
BccI	CCATC	3 cut(s)	469, 557, 738
BceAI	ACGGC	1 cut(s)	842
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	177, 524
BfaI	CTAG	7 cut(s)	74, 114, 362, 524, 542, 636, 819
BfmI	CTRYAG	2 cut(s)	84, 606
BfuI	GTATCC	1 cut(s)	250
Bme18I	GGWCC	2 cut(s)	458, 730
BmgT120I	GGNCC	2 cut(s)	458, 730
BmiI	GGNNCC	1 cut(s)	568
BmrI	ACTGGG	1 cut(s)	66
BmtI	GCTAGC	3 cut(s)	365, 527, 639
BmuI	ACTGGG	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	808
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	733
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	813
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	3 cut(s)	304, 330, 643
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	1 cut(s)	619
BseLI	CCNNNNNNNGG	1 cut(s)	813
BseMI	GCAATG	3 cut(s)	304, 330, 643
BseMII	CTCAG	4 cut(s)	395, 519, 701, 822
BseNI	ACTGG	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	345
Bsh1236I	CGCG	2 cut(s)	177, 602
BshFI	GGCC	1 cut(s)	817
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	1 cut(s)	813
BsmAI	GTCTC	2 cut(s)	177, 524
BsmFI	GGGAC	1 cut(s)	751
BsnI	GGCC	1 cut(s)	817
Bso31I	GGTCTC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	5 cut(s)	76, 249, 301, 340, 430
Bsp68I	TCGCGA	1 cut(s)	177
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	4 cut(s)	394, 520, 700, 821
BspFNI	CGCG	2 cut(s)	177, 602
BspLI	GGNNCC	1 cut(s)	568
BspMAI	CTGCAG	1 cut(s)	88
BspOI	GCTAGC	3 cut(s)	365, 527, 639
BspPI	GGATC	3 cut(s)	296, 335, 438
BspT107I	GGYRCC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	524
BsrDI	GCAATG	3 cut(s)	304, 330, 643
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	5 cut(s)	76, 249, 301, 340, 430
BssT1I	CCWWGG	1 cut(s)	733
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	5 cut(s)	321, 363, 525, 637, 641
BstDEI	CTNAG	5 cut(s)	381, 443, 528, 687, 808
BstF5I	GGATG	1 cut(s)	619
BstFNI	CGCG	2 cut(s)	177, 602
BstKTI	GATC	5 cut(s)	79, 252, 304, 343, 433
BstMAI	GTCTC	2 cut(s)	177, 524
BstMBI	GATC	5 cut(s)	76, 249, 301, 340, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 524, 645
BstNSI	RCATGY	2 cut(s)	154, 292
BstSFI	CTRYAG	2 cut(s)	84, 606
BstUI	CGCG	2 cut(s)	177, 602
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	817
BtsCI	GGATG	1 cut(s)	619
BtsI	GCAGTG	2 cut(s)	93, 706
BtsIMutI	CAGTG	4 cut(s)	54, 93, 669, 706
BtuMI	TCGCGA	1 cut(s)	177
Cac8I	GCNNGC	5 cut(s)	321, 363, 525, 637, 641
Cfr13I	GGNCC	2 cut(s)	458, 730
CseI	GACGC	2 cut(s)	59, 591
Csp6I	GTAC	2 cut(s)	552, 839
CviAII	CATG	5 cut(s)	47, 122, 151, 194, 289
CviQI	GTAC	2 cut(s)	552, 839
DdeI	CTNAG	5 cut(s)	381, 443, 528, 687, 808
DpnI	GATC	5 cut(s)	78, 251, 303, 342, 432
DpnII	GATC	5 cut(s)	76, 249, 301, 340, 430
DrdI	GACNNNNNNGTC	1 cut(s)	728
DseDI	GACNNNNNNGTC	1 cut(s)	728
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
EciI	GGCGGA	1 cut(s)	666
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	524
Eco47I	GGWCC	2 cut(s)	458, 730
Eco53kI	GAGCTC	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	733
EcoT22I	ATGCAT	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	5 cut(s)	50, 125, 154, 197, 292
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	5 cut(s)	46, 121, 150, 193, 288
FbaI	TGATCA	1 cut(s)	249
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	1 cut(s)	220
FspBI	CTAG	7 cut(s)	74, 114, 362, 524, 542, 636, 819
GsaI	CCCAGC	1 cut(s)	349
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	2 cut(s)	59, 591
Hin1II	CATG	5 cut(s)	50, 125, 154, 197, 292
HincII	GTYRAC	1 cut(s)	824
HindII	GTYRAC	1 cut(s)	824
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	62, 109, 590
Hpy166II	GTNNAC	1 cut(s)	824
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	2 cut(s)	74, 176
Hpy8I	GTNNAC	1 cut(s)	824
HpyAV	CCTTC	2 cut(s)	198, 274
HpyCH4V	TGCA	8 cut(s)	86, 125, 297, 373, 643, 648, 672, 798
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 524, 645
HpyF3I	CTNAG	5 cut(s)	381, 443, 528, 687, 808
Hsp92II	CATG	5 cut(s)	50, 125, 154, 197, 292
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	5 cut(s)	76, 249, 301, 340, 430
LmnI	GCTCC	2 cut(s)	60, 215
LpnPI	CCDG	9 cut(s)	42, 198, 256, 359, 497, 562, 573, 612, 738
MaeI	CTAG	7 cut(s)	74, 114, 362, 524, 542, 636, 819
MaeIII	GTNAC	2 cut(s)	50, 284
MalI	GATC	5 cut(s)	78, 251, 303, 342, 432
MboI	GATC	5 cut(s)	76, 249, 301, 340, 430
MboII	GAAGA	4 cut(s)	143, 572, 593, 770
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	6 cut(s)	256, 374, 386, 658, 712, 757
MluI	ACGCGT	1 cut(s)	600
MmeI	TCCRAC	1 cut(s)	635
MnlI	CCTC	9 cut(s)	4, 88, 133, 165, 390, 556, 577, 696, 817
Mph1103I	ATGCAT	1 cut(s)	127
MseI	TTAA	1 cut(s)	18
MspI	CCGG	1 cut(s)	243
MvnI	CGCG	2 cut(s)	177, 602
MwoI	GCNNNNNNNGC	3 cut(s)	320, 524, 645
NdeII	GATC	5 cut(s)	76, 249, 301, 340, 430
NheI	GCTAGC	3 cut(s)	361, 523, 635
NlaIII	CATG	5 cut(s)	50, 125, 154, 197, 292
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	50, 284
NruI	TCGCGA	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	2 cut(s)	154, 292
PciI	ACATGT	1 cut(s)	288
PscI	ACATGT	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	458, 730
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	430
RruI	TCGCGA	1 cut(s)	177
RsaI	GTAC	2 cut(s)	553, 840
RsaNI	GTAC	2 cut(s)	552, 839
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	5 cut(s)	76, 249, 301, 340, 430
Sau96I	GGNCC	2 cut(s)	458, 730
SduI	GDGCHC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	84, 606
SinI	GGWCC	2 cut(s)	458, 730
Sse9I	AATT	6 cut(s)	256, 374, 386, 658, 712, 757
SsiI	CCGC	1 cut(s)	677
SspMI	CTAG	7 cut(s)	74, 114, 362, 524, 542, 636, 819
SstI	GAGCTC	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	733
TaqI	TCGA	1 cut(s)	235
TasI	AATT	6 cut(s)	256, 374, 386, 658, 712, 757
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	4 cut(s)	61, 93, 669, 706
TseFI	GTSAC	2 cut(s)	50, 284
Tsp45I	GTSAC	2 cut(s)	50, 284
TspDTI	ATGAA	4 cut(s)	256, 463, 524, 573
TspRI	CASTG	4 cut(s)	61, 93, 669, 706
VpaK11BI	GGWCC	2 cut(s)	458, 730
XapI	RAATTY	2 cut(s)	386, 658
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	2 cut(s)	154, 292
XspI	CTAG	7 cut(s)	74, 114, 362, 524, 542, 636, 819
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.