Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Reverse (-)

15011333 .. 15012350

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTACTCGACTATCCACCCGAGAAGCTTCACGTGTATTTGTCAGATGATGCCGGTGCTGATGTGACTCTGAATGGTATGAGAGAGGCTTCGAAGTTTGCAAAGCGGTGGATTCCATTTTGTAAGAGGTTTAAGATCAAGTGCAGATCTCCGAAAGCCTATTTCTCAGCAGCACAGGATGAGAATGAAGATGGTGATTTGGGGGGTACTGATTTCATACAAGAGAGACAAATTGTTCGGGTTATAAACATGACCCGAATTAATTTTGTGACAAACATGCAATTTAGAGAATATTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

100

Amino Acids

11.72

Weight (kDa)

7.76

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	2 - 80	6.9e-20	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AciI	CCGC	1 cut(s)	106
AcvI	CACGTG	1 cut(s)	34
AfaI	GTAC	2 cut(s)	6, 208
AflIII	ACRYGT	1 cut(s)	33
AluBI	AGCT	2 cut(s)	28, 300
AluI	AGCT	2 cut(s)	28, 300
Alw26I	GTCTC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AseI	ATTAAT	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	20
BbrPI	CACGTG	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	92
BsaAI	YACGTR	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	53
BseGI	GGATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	135, 146
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	2 cut(s)	135, 146
BstBAI	YACGTR	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	138, 149
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	135, 146
BstNSI	RCATGY	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	5, 207
CviAII	CATG	2 cut(s)	250, 277
CviJI	RGCY	4 cut(s)	28, 89, 158, 300
CviKI_1	RGCY	4 cut(s)	28, 89, 158, 300
CviQI	GTAC	2 cut(s)	5, 207
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	2 cut(s)	137, 148
DpnII	GATC	2 cut(s)	135, 146
Eco72I	CACGTG	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	20
FaeI	CATG	2 cut(s)	253, 280
FaiI	YATR	5 cut(s)	80, 218, 245, 251, 278
FatI	CATG	2 cut(s)	249, 276
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	2 cut(s)	253, 280
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	67, 112
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	46, 72, 153
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	101, 144, 280
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	253, 280
Kzo9I	GATC	2 cut(s)	135, 146
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	2 cut(s)	67, 161
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	64, 268
MalI	GATC	2 cut(s)	137, 148
MboI	GATC	2 cut(s)	135, 146
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	1 cut(s)	146
MluCI	AATT	4 cut(s)	231, 258, 262, 281
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	2 cut(s)	79, 120
MseI	TTAA	2 cut(s)	132, 261
MspI	CCGG	1 cut(s)	54
NdeII	GATC	2 cut(s)	135, 146
NlaIII	CATG	2 cut(s)	253, 280
NmuCI	GTSAC	2 cut(s)	64, 268
NspI	RCATGY	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	61
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	61
Ppu21I	YACGTR	1 cut(s)	34
PshBI	ATTAAT	1 cut(s)	261
PsiI	TTATAA	1 cut(s)	245
PspCI	CACGTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	2 cut(s)	6, 208
RsaNI	GTAC	2 cut(s)	5, 207
SaqAI	TTAA	2 cut(s)	132, 261
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	135, 146
SchI	GAGTC	1 cut(s)	61
SetI	ASST	4 cut(s)	30, 36, 131, 302
SfaNI	GCATC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	92
Sse9I	AATT	4 cut(s)	231, 258, 262, 281
SsiI	CCGC	1 cut(s)	106
SspI	AATATT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	9, 92
TasI	AATT	4 cut(s)	231, 258, 262, 281
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	132, 261
Tru9I	TTAA	2 cut(s)	132, 261
TseFI	GTSAC	2 cut(s)	64, 268
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	2 cut(s)	64, 268
TspDTI	ATGAA	2 cut(s)	201, 205
VspI	ATTAAT	1 cut(s)	261
XceI	RCATGY	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.