Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039496.1

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 475

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039496.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgcgagaggcttggaagtttgcaaagcggtggattccattttgtaagaggtataagatcaagtgcaggtctccgaaagcctatttctcagcagcagaggatgagaatgaagatggtgatttggggggtactgatttcatacaagagagacaaattgttcaggaaaaatatgaggtgtttaaggaaagagtgacagaatacgcaaggcatggtgacactgggagcagtaagcgtcgagatcattctgcagtgattgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

86

Amino Acids

10.22

Weight (kDa)

8.58

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AciI	CCGC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	130
Alw26I	GTCTC	2 cut(s)	75, 142
ApeKI	GCWGC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	128, 224
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	75, 142
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	75, 142
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	57, 238
BspACI	CCGC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	101
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	57, 238
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	60, 241
BstMAI	GTCTC	2 cut(s)	75, 142
BstMBI	GATC	2 cut(s)	57, 238
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	216, 255
BveI	ACCTGC	1 cut(s)	57
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	2 cut(s)	11, 80
CviKI_1	RGCY	2 cut(s)	11, 80
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	2 cut(s)	59, 240
DpnII	GATC	2 cut(s)	57, 238
Eco31I	GGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	54, 140, 171, 210
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	2 cut(s)	128, 224
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	161, 236
Hpy99I	CGWCG	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	23, 66, 248
HpyF3I	CTNAG	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	57, 238
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	3 cut(s)	52, 146, 204
Lsp1109I	GCAGC	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	190, 212
MalI	GATC	2 cut(s)	59, 240
MboI	GATC	2 cut(s)	57, 238
MboII	GAAGA	1 cut(s)	122
MluCI	AATT	1 cut(s)	153
MnlI	CCTC	3 cut(s)	42, 91, 166
MseI	TTAA	1 cut(s)	180
NdeII	GATC	2 cut(s)	57, 238
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	2 cut(s)	190, 212
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	57, 238
SetI	ASST	3 cut(s)	53, 71, 177
SfcI	CTRYAG	1 cut(s)	246
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	28
TaqI	TCGA	1 cut(s)	235
TasI	AATT	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	223, 255
TseFI	GTSAC	2 cut(s)	190, 212
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	2 cut(s)	190, 212
TspDTI	ATGAA	2 cut(s)	123, 127
TspRI	CASTG	2 cut(s)	223, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.