pycom12g05850

Belongs to the glycosyltransferase 2 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
5899149 .. 5901228
2080 bp
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UTR
Exon/CDS
Intron
pycom12g05850.1

Sequence Viewer

Length: 1332 bp
ATGCATTGCCATGATACAAGTTCGGCTCGGCAAGCAATGTGTTTCCACCTAGACCCCAAGATATCACACTCTCTAGCATTTGTTCAATTTCCTCAAAAATTTTGCAACATCAGTAACAACGATATCTATGACAGTCAGTTGAGATCAACATTGAAGGTGCTATGGAAAGGTTATGATGGGCTTGGAGGGCCATTCGTGACTGGTACTGGCTACTACATCAAGAGGGTGTCCTTATGTGAAAGTTCCATTAGTGAAGCCGGGGATGCAATGAAACTTAGACAATGTTTTGGTCCATCCAATGAGTTCATCAAATCCCTCCGCCAAATCAACAAGCCTGATCGTATGTTCGTCCAAAGAAATAATGCACAGCCAAATGAAACCCAACTACTAGCATCTTGTGCTTATGAAGATGGCACCAAATGGGGCAAAGAGGTTGGTTTCTTATACGGTTCAGTGGTGGAAGATTACTTCACAGGGTTTCATTTGCATTGCAAAGGTTGGATTTCAGTGTATTGTGATCCAAAAAGGCCACACTTCTTGGGCAGTGGCACCACCAATTTGGATGATCTTTTGGTCCAAGGGACAAGATGGTCCTCCGGCTTCGTTGATGTTGCTATCTCGAAGTTTAATCCTCTTATATATGGCCCTTTCAAAATGCCCACTTTTCTTCACAGCATGTGTTATGCAGAATTTGCCTTTTTCCCCATTTTCTATTTCTTGTCGCTCTGGGGCTTTGCTACCATTCCTCAACTCTGCCTACTCAATGGCATTCCTTTATACCCTCAGGTCTCAAATACTTATTTCATTGTATTTTCGTTCATATTCCTATCATCCCATTCTAAACATTTATACGAGGTGCTCACAACGGGGTCAACATTTCGACATTGGGTAAATGAGCAGAGGATATGGATGATGAAGTCAGTCACATCCCATTTATATGGTAGTGTGGATGCTTTCATGAAGAAACTTGGAATGAGAGAAGCCAGTTTTTTTCCAACGAATAAAGTCGACGACGTCCAACAACTCAAGCGTTACAATATGGGAGTATTTGATTTCCAAACATCACGACTATTTCTTGTTCCAATGGTTGCCCTAGTCATCTTGAACATGGCATCGTTTGTTGTGGGGATTGCTAGAGGGATCGTTCTGGGGGAGTTGGACAAGATGTTCATACAAGTTTTCATACCCTTCTATGTCATAGTAATGAACTACCCTATCATTGAAGGAATGCTTATAAGGAAAGACAAAGGAAGCATTCCACTCTTTGTTACCCTAGTATCTGCCTTAGTTTCCCTCATTTTCTATTTTTTTGGTTCTATTATTTTCATGTAG

Protein Analysis

444

Amino Acids

50.57

Weight (kDa)

8.77

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cellulose_synt PF03552 6 - 78 7.1e-12 Cellulose synthase
Cellulose_synt PF03552 88 - 434 4.1e-61 Cellulose synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1235
AasI GACNNNNNNGTC 1 cut(s) 589
AatII GACGTC 1 cut(s) 1017
AccB1I GGYRCC 2 cut(s) 413, 548
AccI GTMKAC 1 cut(s) 1008
AciI CCGC 1 cut(s) 319
AclWI GGATC 2 cut(s) 512, 1148
AcsI RAATTY 2 cut(s) 98, 689
AcyI GRCGYC 1 cut(s) 1014
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 5 cut(s) 86, 154, 652, 1105, 1223
AloI GAACNNNNNNTCC 2 cut(s) 1151, 1183
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 1 cut(s) 793
AlwI GGATC 2 cut(s) 512, 1148
AoxI GGCC 3 cut(s) 188, 527, 643
ApoI RAATTY 2 cut(s) 98, 689
AspS9I GGNCC 5 cut(s) 188, 290, 574, 591, 644
AsuC2I CCSGG 1 cut(s) 259
AvaII GGWCC 3 cut(s) 290, 574, 591
AxyI CCTNAGG 1 cut(s) 783
BaeI ACNNNNGTAYC 2 cut(s) 1260, 1293
BanI GGYRCC 2 cut(s) 413, 548
Bbv12I GWGCWC 1 cut(s) 861
BccI CCATC 4 cut(s) 170, 301, 404, 582
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 793
BfaI CTAG 6 cut(s) 50, 74, 389, 1094, 1134, 1274
Bme1390I CCNGG 1 cut(s) 259
Bme18I GGWCC 3 cut(s) 290, 574, 591
BmgT120I GGNCC 5 cut(s) 188, 290, 574, 591, 644
BmiI GGNNCC 2 cut(s) 415, 550
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 4 cut(s) 253, 401, 940, 1121
BpuEI CTTGAG 1 cut(s) 1010
BpuMI CCSGG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 1014
BsaI GGTCTC 1 cut(s) 793
BsaJI CCNNGG 2 cut(s) 258, 577
Bse1I ACTGG 3 cut(s) 205, 211, 984
Bse21I CCTNAGG 1 cut(s) 783
Bse3DI GCAATG 4 cut(s) 4, 42, 273, 487
BseDI CCNNGG 2 cut(s) 258, 577
BseGI GGATG 7 cut(s) 268, 293, 568, 830, 915, 926, 955
BseMI GCAATG 4 cut(s) 4, 42, 273, 487
BseMII CTCAG 1 cut(s) 797
BseNI ACTGG 3 cut(s) 205, 211, 984
BshFI GGCC 3 cut(s) 190, 529, 645
BshNI GGYRCC 2 cut(s) 413, 548
BsiHKAI GWGCWC 1 cut(s) 861
BsiSI CCGG 2 cut(s) 258, 597
BslFI GGGAC 1 cut(s) 595
BsmAI GTCTC 1 cut(s) 793
BsmFI GGGAC 1 cut(s) 595
BsmI GAATGC 3 cut(s) 768, 1233, 1254
BsnI GGCC 3 cut(s) 190, 529, 645
Bso31I GGTCTC 1 cut(s) 793
Bsp1286I GDGCHC 1 cut(s) 861
Bsp143I GATC 5 cut(s) 143, 337, 517, 565, 1140
BspACI CCGC 1 cut(s) 319
BspANI GGCC 3 cut(s) 190, 529, 645
BspCNI CTCAG 1 cut(s) 796
BspHI TCATGA 1 cut(s) 957
BspLI GGNNCC 2 cut(s) 415, 550
BspPI GGATC 2 cut(s) 512, 1148
BspT107I GGYRCC 2 cut(s) 413, 548
BspTNI GGTCTC 1 cut(s) 793
BsrDI GCAATG 4 cut(s) 4, 42, 273, 487
BsrI ACTGG 3 cut(s) 205, 211, 984
BssECI CCNNGG 2 cut(s) 258, 577
BssMI GATC 5 cut(s) 143, 337, 517, 565, 1140
BssNI GRCGYC 1 cut(s) 1014
BssT1I CCWWGG 1 cut(s) 577
Bst4CI ACNGT 2 cut(s) 134, 449
BstACI GRCGYC 1 cut(s) 1014
BstAPI GCANNNNNTGC 2 cut(s) 398, 692
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 275, 783, 1285
BstF5I GGATG 7 cut(s) 268, 293, 568, 830, 915, 926, 955
BstKTI GATC 5 cut(s) 146, 340, 520, 568, 1143
BstMAI GTCTC 1 cut(s) 793
BstMBI GATC 5 cut(s) 143, 337, 517, 565, 1140
BstMWI GCNNNNNNNGC 5 cut(s) 32, 187, 263, 398, 692
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 1 cut(s) 257
BstXI CCANNNNNNTGG 2 cut(s) 559, 938
Bsu36I CCTNAGG 1 cut(s) 783
BsuRI GGCC 3 cut(s) 190, 529, 645
BtsCI GGATG 7 cut(s) 268, 293, 568, 830, 915, 926, 955
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 3 cut(s) 459, 513, 550
Cac8I GCNNGC 1 cut(s) 33
CciI TCATGA 1 cut(s) 957
Cfr13I GGNCC 5 cut(s) 188, 290, 574, 591, 644
Csp6I GTAC 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviAII CATG 5 cut(s) 11, 676, 958, 1108, 1327
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 3 cut(s) 275, 783, 1285
DpnI GATC 5 cut(s) 145, 339, 519, 567, 1142
DpnII GATC 5 cut(s) 143, 337, 517, 565, 1140
DrdI GACNNNNNNGTC 1 cut(s) 589
DseDI GACNNNNNNGTC 1 cut(s) 589
EciI GGCGGA 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 793
Eco32I GATATC 2 cut(s) 63, 124
Eco47I GGWCC 3 cut(s) 290, 574, 591
Eco81I CCTNAGG 1 cut(s) 783
EcoRV GATATC 2 cut(s) 63, 124
EcoT14I CCWWGG 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 5 cut(s) 14, 679, 961, 1111, 1330
FalI AAGNNNNNCTT 2 cut(s) 1215, 1247
FaqI GGGAC 1 cut(s) 595
FatI CATG 5 cut(s) 10, 675, 957, 1107, 1326
FblI GTMKAC 1 cut(s) 1008
FokI GGATG 7 cut(s) 275, 280, 575, 817, 913, 922, 962
FspBI CTAG 6 cut(s) 50, 74, 389, 1094, 1134, 1274
HaeIII GGCC 3 cut(s) 190, 529, 645
HapII CCGG 2 cut(s) 258, 597
Hin1I GRCGYC 1 cut(s) 1014
Hin1II CATG 5 cut(s) 14, 679, 961, 1111, 1330
HincII GTYRAC 2 cut(s) 873, 1009
HindII GTYRAC 2 cut(s) 873, 1009
HpaII CCGG 2 cut(s) 258, 597
Hpy166II GTNNAC 2 cut(s) 873, 1009
Hpy188III TCNNGA 6 cut(s) 196, 220, 619, 958, 1065, 1102
Hpy8I GTNNAC 2 cut(s) 873, 1009
Hpy99I CGWCG 2 cut(s) 1013, 1016
HpyAV CCTTC 3 cut(s) 148, 1198, 1217
HpyCH4III ACNGT 2 cut(s) 134, 449
HpyCH4IV ACGT 1 cut(s) 1014
HpyCH4V TGCA 7 cut(s) 4, 105, 266, 365, 487, 492, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 187, 263, 398, 692
HpyF3I CTNAG 3 cut(s) 275, 783, 1285
HpySE526I ACGT 1 cut(s) 1014
Hsp92I GRCGYC 1 cut(s) 1014
Hsp92II CATG 5 cut(s) 14, 679, 961, 1111, 1330
Kzo9I GATC 5 cut(s) 143, 337, 517, 565, 1140
LweI GCATC 4 cut(s) 253, 401, 940, 1121
MaeI CTAG 6 cut(s) 50, 74, 389, 1094, 1134, 1274
MaeII ACGT 1 cut(s) 1014
MaeIII GTNAC 5 cut(s) 113, 196, 922, 1031, 1267
MalI GATC 5 cut(s) 145, 339, 519, 567, 1142
MboI GATC 5 cut(s) 143, 337, 517, 565, 1140
MboII GAAGA 4 cut(s) 419, 473, 659, 973
MhlI GDGCHC 1 cut(s) 861
MluCI AATT 4 cut(s) 86, 98, 556, 689
MmeI TCCRAC 4 cut(s) 479, 1019, 1042, 1137
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 627
MslI CAYNNNNRTG 3 cut(s) 9, 936, 1202
MspI CCGG 2 cut(s) 258, 597
MspR9I CCNGG 1 cut(s) 259
Mva1269I GAATGC 3 cut(s) 768, 1233, 1254
MwoI GCNNNNNNNGC 5 cut(s) 32, 187, 263, 398, 692
NciI CCSGG 1 cut(s) 259
NdeII GATC 5 cut(s) 143, 337, 517, 565, 1140
NlaIII CATG 5 cut(s) 14, 679, 961, 1111, 1330
NlaIV GGNNCC 2 cut(s) 415, 550
NmeAIII GCCGAG 1 cut(s) 7
NmuCI GTSAC 2 cut(s) 196, 922
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 679
PagI TCATGA 1 cut(s) 957
PctI GAATGC 3 cut(s) 768, 1233, 1254
PflFI GACNNNGTC 1 cut(s) 1013
PsiI TTATAA 1 cut(s) 1235
PspN4I GGNNCC 2 cut(s) 415, 550
PspPI GGNCC 5 cut(s) 188, 290, 574, 591, 644
PsyI GACNNNGTC 1 cut(s) 1013
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 3 cut(s) 9, 936, 1202
SalI GTCGAC 1 cut(s) 1007
SaqAI TTAA 1 cut(s) 627
Sau3AI GATC 5 cut(s) 143, 337, 517, 565, 1140
Sau96I GGNCC 5 cut(s) 188, 290, 574, 591, 644
ScrFI CCNGG 1 cut(s) 259
SduI GDGCHC 1 cut(s) 861
SetI ASST 8 cut(s) 51, 159, 172, 435, 499, 789, 858, 1017
SfaNI GCATC 4 cut(s) 253, 401, 940, 1121
SinI GGWCC 3 cut(s) 290, 574, 591
SmiMI CAYNNNNRTG 3 cut(s) 9, 936, 1202
SmlI CTYRAG 1 cut(s) 1025
SmoI CTYRAG 1 cut(s) 1025
Sse9I AATT 4 cut(s) 86, 98, 556, 689
SsiI CCGC 1 cut(s) 319
SspMI CTAG 6 cut(s) 50, 74, 389, 1094, 1134, 1274
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 2 cut(s) 134, 449
TaiI ACGT 1 cut(s) 1017
TaqI TCGA 3 cut(s) 620, 880, 1008
TasI AATT 4 cut(s) 86, 98, 556, 689
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 3 cut(s) 459, 513, 550
TseFI GTSAC 2 cut(s) 196, 922
Tsp45I GTSAC 2 cut(s) 196, 922
TspRI CASTG 3 cut(s) 459, 513, 550
Tth111I GACNNNGTC 1 cut(s) 1013
VpaK11BI GGWCC 3 cut(s) 290, 574, 591
XapI RAATTY 2 cut(s) 98, 689
XceI RCATGY 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 1008
XspI CTAG 6 cut(s) 50, 74, 389, 1094, 1134, 1274
ZraI GACGTC 1 cut(s) 1015
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.