Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8060516.1

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 507

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8060516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ttaccatctcttattgtctttgtggccgagctcctctcttctttcgagtggcttctaacccaggcatatcggtggaggcccgtctctcgaactgtgttcccggagagattgccggaagatgacaaacttcctgcagtcgacgtgttcatttgcaccgctgatccggagaaggagccacccgtggaggtgatgaacactgtaatatcagccatggcactcgactatccaccccagaagcttcacgtgtatttgtcagatgatggcggtgctgatgtgactctgaatggcatgcgagaggcttggaagtttgcaaagcggtggattccattttgtaagaggtataagatcaagtgcaggtctccgaaagcctatttctcagcagcagaggatgagaatgaagatggtgatttggggggtactgatttcatacaagagagacaaattgttcaggttataaacatggcccgaattaattttgtgacagacatgcaatttagtgaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

168

Amino Acids

19.33

Weight (kDa)

4.8

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	3 cut(s)	156, 264, 316
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	500
AcvI	CACGTG	1 cut(s)	244
AfaI	GTAC	1 cut(s)	418
AflIII	ACRYGT	2 cut(s)	141, 243
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	31, 238
AluI	AGCT	2 cut(s)	31, 238
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	3 cut(s)	88, 363, 430
AlwI	GGATC	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	3 cut(s)	24, 77, 462
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	500
AseI	ATTAAT	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	78, 463
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	199, 416
BanII	GRGCYC	1 cut(s)	33
BbrPI	CACGTG	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	3 cut(s)	13, 254, 395
BciT130I	CCWGG	1 cut(s)	62
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	3 cut(s)	88, 363, 430
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	62, 101
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	78, 463
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	2 cut(s)	62, 101
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpuMI	CCSGG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	60, 180, 210
BsaWI	WCCGGW	1 cut(s)	163
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	60, 180, 210
BseGI	GGATG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	373
BshFI	GGCC	3 cut(s)	26, 79, 464
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	3 cut(s)	101, 113, 164
BsmAI	GTCTC	3 cut(s)	88, 363, 430
BsmBI	CGTCTC	1 cut(s)	88
BsnI	GGCC	3 cut(s)	26, 79, 464
Bso31I	GGTCTC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	160, 345
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	3 cut(s)	156, 264, 316
BspANI	GGCC	3 cut(s)	26, 79, 464
BspCNI	CTCAG	1 cut(s)	389
BspEI	TCCGGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	363
BssECI	CCNNGG	3 cut(s)	60, 180, 210
BssMI	GATC	2 cut(s)	160, 345
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	94, 199
Bst6I	CTCTTC	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	376
BstDSI	CCRYGG	2 cut(s)	180, 210
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	163, 348
BstMAI	GTCTC	3 cut(s)	88, 363, 430
BstMBI	GATC	2 cut(s)	160, 345
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	2 cut(s)	292, 490
BstSCI	CCNGG	2 cut(s)	60, 99
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	26, 79, 464
BtgI	CCRYGG	2 cut(s)	180, 210
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	78, 463
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	4 cut(s)	211, 289, 460, 487
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	2 cut(s)	162, 347
DpnII	GATC	2 cut(s)	160, 345
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	31
Eco72I	CACGTG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	4 cut(s)	214, 292, 463, 490
FaiI	YATR	8 cut(s)	67, 212, 290, 342, 428, 455, 461, 488
FatI	CATG	4 cut(s)	210, 288, 459, 486
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	26, 79, 464
HapII	CCGG	3 cut(s)	101, 113, 164
Hin1II	CATG	4 cut(s)	214, 292, 463, 490
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	277, 322
HpaII	CCGG	3 cut(s)	101, 113, 164
HphI	GGTGA	2 cut(s)	199, 416
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	256, 282, 363
Hpy188III	TCNNGA	2 cut(s)	87, 164
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	2 cut(s)	94, 199
HpyCH4IV	ACGT	2 cut(s)	141, 243
HpyCH4V	TGCA	5 cut(s)	134, 153, 311, 354, 490
HpyF3I	CTNAG	1 cut(s)	376
HpySE526I	ACGT	2 cut(s)	141, 243
Hsp92II	CATG	4 cut(s)	214, 292, 463, 490
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	160, 345
LmnI	GCTCC	2 cut(s)	36, 172
LpnPI	CCDG	9 cut(s)	47, 74, 114, 126, 144, 177, 245, 340, 434
Lsp1109I	GCAGC	1 cut(s)	392
MaeII	ACGT	2 cut(s)	141, 243
MaeIII	GTNAC	2 cut(s)	274, 478
MalI	GATC	2 cut(s)	162, 347
MboI	GATC	2 cut(s)	160, 345
MboII	GAAGA	3 cut(s)	30, 128, 410
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	5 cut(s)	441, 468, 472, 491, 500
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	6 cut(s)	44, 69, 178, 289, 330, 379
MroI	TCCGGA	1 cut(s)	163
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	70
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	3 cut(s)	101, 113, 164
MspR9I	CCNGG	2 cut(s)	62, 101
MvaI	CCWGG	1 cut(s)	62
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	160, 345
NlaIII	CATG	4 cut(s)	214, 292, 463, 490
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	274, 478
NspI	RCATGY	2 cut(s)	292, 490
PaeI	GCATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	271
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	244
PshBI	ATTAAT	1 cut(s)	471
PsiI	TTATAA	1 cut(s)	455
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	60
PspCI	CACGTG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	78, 463
PstI	CTGCAG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	33
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	2 cut(s)	160, 345
Sau96I	GGNCC	2 cut(s)	78, 463
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	62, 101
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	8 cut(s)	33, 144, 189, 240, 246, 341, 359, 453
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	70
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	5 cut(s)	441, 468, 472, 491, 500
SsiI	CCGC	3 cut(s)	156, 264, 316
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	60, 99
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	94, 199
TaiI	ACGT	2 cut(s)	144, 246
TaqI	TCGA	4 cut(s)	45, 88, 138, 219
TasI	AATT	5 cut(s)	441, 468, 472, 491, 500
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	274, 478
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	2 cut(s)	274, 478
TspDTI	ATGAA	4 cut(s)	136, 206, 411, 415
TspRI	CASTG	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	2 cut(s)	292, 490
XmiI	GTMKAC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.