Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

14138066 .. 14139094

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGAATCCAAAGTTCCCTCTCCATCTTTGCCATGTCCACAAGCTTTCAAACTTCATCAACCGAACACATATCCTCGTCCACTCAATCGCTCTAGCCTTCTTGTTTTACTATAGAGCCTCCTTCTTCTTCCAACACTCCAATACCAAAGCCACAACCCTACCATGGCTTCTTGTCTTTGCCTCGGAAATCCTCCTTGCCTTCGAATGGCTCCTCAGCCAATCATTTCGCTGGCGGACTGTTTCGCGAACCGTGTTCCCAGAGAGGCTGCCAGAGAATGACAAACTTCCTGCAATTGACGTGTTAATTTGCACCGCGGATCCGGAGAAGGAGCCAACCGTGATGGTTATGAACACGGTGTTATCAGCCATGGCAATGGACTATCCACCGGAGAAGCTTCATGTGTATCTATCTGATGACGGCTGTGCTGCCGTGACTTTGAATGGGATGAGAGAGGCTTGGAGGTTTGCAAAGTGGTGGCTTCCGTTTTGTAGGAGGTATGGGATCAAGTGTACGGCTCCGGAGGCTTATTTCTCTGCAGGAGGAGGAGGTGATGGCTATGAGGATGGTGATTCCGGGGGTAGTGAGTTCGTACAAGAGAAAGAGCATATTAAGGAGGCATACGAGGGGTTTAAGAAAAGAGTAACAGAAAATGCTAGGATTGAGGACGCCAGGAGCAACATGTGTCGAGATCACTCTGCAGTCATTGAGGTATTGTTATTTTGTACCCTGCATATCACTTTGTTTGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

252

Amino Acids

28.8

Weight (kDa)

6.06

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	247, 317
AccIII	TCCGGA	2 cut(s)	322, 520
AciI	CCGC	3 cut(s)	235, 315, 317
AclWI	GGATC	3 cut(s)	314, 327, 512
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	3 cut(s)	514, 594, 727
AfiI	CCNNNNNNNGG	2 cut(s)	165, 207
AflIII	ACRYGT	2 cut(s)	300, 681
AgsI	TTSAA	2 cut(s)	51, 442
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	671
AluBI	AGCT	2 cut(s)	46, 397
AluI	AGCT	2 cut(s)	46, 397
AlwI	GGATC	3 cut(s)	314, 327, 512
Aor13HI	TCCGGA	2 cut(s)	322, 520
ApeKI	GCWGC	2 cut(s)	268, 428
AsuC2I	CCSGG	1 cut(s)	577
AsuHPI	GGTGA	2 cut(s)	563, 581
AsuII	TTCGAA	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	319
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	255, 415
BccI	CCATC	4 cut(s)	33, 337, 548, 560
BceAI	ACGGC	3 cut(s)	416, 436, 531
BciT130I	CCWGG	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	577
BfaI	CTAG	2 cut(s)	95, 657
BfmI	CTRYAG	3 cut(s)	112, 537, 699
BisI	GCNGC	2 cut(s)	269, 429
BlsI	GCNGC	2 cut(s)	270, 430
Bme1390I	CCNGG	2 cut(s)	577, 673
BmgBI	CACGTC	1 cut(s)	301
BmiI	GGNNCC	4 cut(s)	212, 321, 333, 519
BmrFI	CCNGG	2 cut(s)	577, 673
Bpu10I	CCTNAGC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	577
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	5 cut(s)	164, 183, 315, 369, 576
BsaWI	WCCGGW	3 cut(s)	322, 388, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 207
Bse3DI	GCAATG	1 cut(s)	381
BseAI	TCCGGA	2 cut(s)	322, 520
BseBI	CCWGG	1 cut(s)	673
BseDI	CCNNGG	5 cut(s)	164, 183, 315, 369, 576
BseGI	GGATG	2 cut(s)	453, 571
BseLI	CCNNNNNNNGG	2 cut(s)	165, 207
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	229
BseRI	GAGGAG	3 cut(s)	203, 558, 561
BseXI	GCAGC	2 cut(s)	255, 415
Bsh1236I	CGCG	2 cut(s)	247, 317
BsiSI	CCGG	4 cut(s)	323, 389, 521, 576
BslI	CCNNNNNNNGG	2 cut(s)	165, 207
Bsp119I	TTCGAA	1 cut(s)	204
Bsp13I	TCCGGA	2 cut(s)	322, 520
Bsp143I	GATC	3 cut(s)	319, 504, 691
Bsp19I	CCATGG	2 cut(s)	164, 369
Bsp68I	TCGCGA	1 cut(s)	247
BspACI	CCGC	3 cut(s)	235, 315, 317
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	2 cut(s)	322, 520
BspFNI	CGCG	2 cut(s)	247, 317
BspLI	GGNNCC	4 cut(s)	212, 321, 333, 519
BspMAI	CTGCAG	2 cut(s)	541, 703
BspPI	GGATC	3 cut(s)	314, 327, 512
BspT104I	TTCGAA	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	381
BssECI	CCNNGG	5 cut(s)	164, 183, 315, 369, 576
BssMI	GATC	3 cut(s)	319, 504, 691
BssNI	GRCGYC	1 cut(s)	669
BssT1I	CCWWGG	2 cut(s)	164, 369
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	4 cut(s)	241, 253, 340, 358
BstACI	GRCGYC	1 cut(s)	669
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	3 cut(s)	164, 315, 369
BstF5I	GGATG	2 cut(s)	453, 571
BstFNI	CGCG	2 cut(s)	247, 317
BstKTI	GATC	3 cut(s)	322, 507, 694
BstMBI	GATC	3 cut(s)	319, 504, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	1 cut(s)	673
BstNSI	RCATGY	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	575, 671
BstSFI	CTRYAG	3 cut(s)	112, 537, 699
BstUI	CGCG	2 cut(s)	247, 317
BstV1I	GCAGC	2 cut(s)	255, 415
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	319
BtgI	CCRYGG	3 cut(s)	164, 315, 369
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	453, 571
BtuMI	TCGCGA	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	233
Cfr42I	CCGCGG	1 cut(s)	318
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	3 cut(s)	513, 593, 726
CviAII	CATG	5 cut(s)	35, 165, 370, 401, 682
CviQI	GTAC	3 cut(s)	513, 593, 726
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	3 cut(s)	321, 506, 693
DpnII	GATC	3 cut(s)	319, 504, 691
EciI	GGCGGA	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	164, 369
EcoRII	CCWGG	1 cut(s)	671
EcoT14I	CCWWGG	2 cut(s)	164, 369
ErhI	CCWWGG	2 cut(s)	164, 369
FaeI	CATG	5 cut(s)	38, 168, 373, 404, 685
FatI	CATG	5 cut(s)	34, 164, 369, 400, 681
Fnu4HI	GCNGC	2 cut(s)	269, 429
FokI	GGATG	2 cut(s)	460, 578
Fsp4HI	GCNGC	2 cut(s)	269, 429
FspBI	CTAG	2 cut(s)	95, 657
GluI	GCNGC	2 cut(s)	269, 429
HapII	CCGG	4 cut(s)	323, 389, 521, 576
HgaI	GACGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	5 cut(s)	38, 168, 373, 404, 685
HindIII	AAGCTT	2 cut(s)	44, 395
HinfI	GANTC	2 cut(s)	7, 572
HpaII	CCGG	4 cut(s)	323, 389, 521, 576
HphI	GGTGA	2 cut(s)	563, 581
Hpy166II	GTNNAC	3 cut(s)	40, 82, 513
Hpy188I	TCNGA	2 cut(s)	187, 415
Hpy188III	TCNNGA	4 cut(s)	246, 323, 521, 689
Hpy8I	GTNNAC	3 cut(s)	40, 82, 513
HpyAV	CCTTC	4 cut(s)	109, 133, 211, 322
HpyCH4III	ACNGT	4 cut(s)	241, 253, 340, 358
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	293, 312, 470, 539, 701, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	1 cut(s)	215
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	5 cut(s)	38, 168, 373, 404, 685
Kpn2I	TCCGGA	2 cut(s)	322, 520
KspI	CCGCGG	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	319, 504, 691
LmnI	GCTCC	4 cut(s)	216, 331, 523, 675
Lsp1109I	GCAGC	2 cut(s)	255, 415
MaeI	CTAG	2 cut(s)	95, 657
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	433, 643
MalI	GATC	3 cut(s)	321, 506, 693
MboI	GATC	3 cut(s)	319, 504, 691
MboII	GAAGA	2 cut(s)	118, 121
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	2 cut(s)	294, 306
MmeI	TCCRAC	1 cut(s)	157
MroI	TCCGGA	2 cut(s)	322, 520
MseI	TTAA	3 cut(s)	305, 612, 633
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	4 cut(s)	323, 389, 521, 576
MspR9I	CCNGG	2 cut(s)	577, 673
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	673
MvnI	CGCG	2 cut(s)	247, 317
MwoI	GCNNNNNNNGC	1 cut(s)	524
NciI	CCSGG	1 cut(s)	577
NcoI	CCATGG	2 cut(s)	164, 369
NdeII	GATC	3 cut(s)	319, 504, 691
NlaIII	CATG	5 cut(s)	38, 168, 373, 404, 685
NlaIV	GGNNCC	4 cut(s)	212, 321, 333, 519
NmuCI	GTSAC	1 cut(s)	433
NruI	TCGCGA	1 cut(s)	247
NspI	RCATGY	1 cut(s)	685
NspV	TTCGAA	1 cut(s)	204
PciI	ACATGT	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	7, 572
PkrI	GCNGC	2 cut(s)	270, 430
PscI	ACATGT	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	671
PspN4I	GGNNCC	4 cut(s)	212, 321, 333, 519
PstI	CTGCAG	2 cut(s)	541, 703
PsuI	RGATCY	1 cut(s)	319
RruI	TCGCGA	1 cut(s)	247
RsaI	GTAC	3 cut(s)	514, 594, 727
RsaNI	GTAC	3 cut(s)	513, 593, 726
RseI	CAYNNNNRTG	1 cut(s)	374
SacII	CCGCGG	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	305, 612, 633
SatI	GCNGC	2 cut(s)	269, 429
Sau3AI	GATC	3 cut(s)	319, 504, 691
ScrFI	CCNGG	2 cut(s)	577, 673
SetI	ASST	7 cut(s)	48, 303, 399, 467, 500, 553, 714
SfcI	CTRYAG	3 cut(s)	112, 537, 699
Sfr303I	CCGCGG	1 cut(s)	318
SfuI	TTCGAA	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	294, 306
SsiI	CCGC	3 cut(s)	235, 315, 317
SspMI	CTAG	2 cut(s)	95, 657
StyD4I	CCNGG	2 cut(s)	575, 671
StyI	CCWWGG	2 cut(s)	164, 369
TaaI	ACNGT	4 cut(s)	241, 253, 340, 358
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	204, 688
TasI	AATT	2 cut(s)	294, 306
TfiI	GAWTC	2 cut(s)	7, 572
Tru1I	TTAA	3 cut(s)	305, 612, 633
Tru9I	TTAA	3 cut(s)	305, 612, 633
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	268, 428
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	3 cut(s)	46, 365, 389
TspGWI	ACGGA	1 cut(s)	474
XceI	RCATGY	1 cut(s)	685
XspI	CTAG	2 cut(s)	95, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.