Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000838

Physical Location & Seq

Genomic Coordinates Forward (+)

14140294 .. 14142681

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCCTACTTTCCCATTTATTTCCCAATTTGTAATACAAGAAACGTCCAGTGAAGGTGATGATGCAATTCAAACATATGAAGCAAAAAATATGCCTCTCCTTGTTTATGTTTCTCGCGAGAAAAGACTCTCTCATCCCCATCATTTCAAGGCTGGAGCGCTCAATGTTCTTTTGCAATGGCAAGGTTATGATGGGCTTGGAGGGCCCTGTGTGTGTGGTACTGGCTACTACATCAAGAGGGTGTCGTTACGTGGAAGTTCCATTAGTGAAGATGGGGATGCAATGAAACTTAGACAATGTTTTGGTCCATCCAATCAGTTCGTCAAATCCCTCCACCAAATCAACAAGCCTGACCATATGTTCATCGAGAGAAATAATGCACAGCTAAATGAAAGCCCACTACTAGCCTCTTGTGCCTATGAAGATGGCACCAAATGGGGTGAAGAGGTTGGTTTCTTATACGGTTCAGTGGTGGAAGATTACTTCACAGGGTTTCATTTGCATTGCAAAGGTTGGATTTCAGTGTTTTGTGATCCAAAAAGGCCACAATTCTTGGGTAGTGGCATCACCAAATTGGATGAGCTTTTGGTCCAAGGGACAAGATGGTCTTCTGGCTTAGTTGATGTTGCTATCTCCAAGTTCAGTCCTCTTATATATGGCCCTTTCAAAACCCACACTTTCCTTCAAAGCATGTGTTATGCAGAAATTGCTCTCTTCTCCATTTTCTATTTCTTGACACTCTGGTGCTTTGCTGTCATTCCTCAAGTGTGTCTACTCAATAGCATTCCTTTGTACCCCGAGGATCAACATTTCAACATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

275

Amino Acids

30.9

Weight (kDa)

5.97

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02981 FvH4_4g02990
malus_domestica	MD02G1095700.v1.1 MD13G1209200.v1.1 MD15G1415100.v1.1 MD15G1415200.v1.1 MD16G1211700.v1.1 MD16G1211900.v1.1 MD16G1212000.v1.1
prunus_persica	Prupe.1G033700_v2.0.a1 Prupe.1G033700_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.1G033900_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.4G193000_v2.0.a1 Prupe.7G089900_v2.0.a1
pyrus_communis	pycom12g05820 pycom12g05850 pycom13g18120 pycom13g18130 pycom16g17740
rosa_chinensis	RchiOBHm_Chr4g0391141 RchiOBHm_Chr4g0391161 RchiOBHm_Chr4g0391171 RchiOBHm_Chr7g0211861
rosa_laevigata	RLG00000002959 RLG00000003213 RLG00000009880 RLG00000009881 RLG00000009882 RLG00000009884 RLG00000009885
rosa_multiflora	Rmu_co8060516.1_g000001 Rmu_sc0002852.1_g000004 Rmu_sc0009005.1_g000004 Rmu_sc0009836.1_g000005 Rmu_sc0020388.1_g000001 Rmu_sc0039496.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247330 Rroxscaffold_5G00336930 Rroxscaffold_5G00336950 Rroxscaffold_5G00336960 Rroxscaffold_5G00344820 Rroxscaffold_5G00344830 Rroxscaffold_5G00344850
rosa_rugosa	Rorug03G0334500 Rorug03G0334900
rosa_samantha	Rh4AG034900 Rh4AG035200 Rh4AG035400 Rh4BG030100 Rh4BG030200 Rh4BG030300 Rh4BG030500 Rh4BG030600 Rh4CG038700 Rh4CG038800 Rh4DG032100 Rh4DG032800 Rh4DG032900 Rh7AG262300 Rh7BG255800 Rh7DG268800
rosa_wichuraiana	Rw4G002720 Rw4G002750 Rw4G002760 Rw4G002770 Rw7G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	772
AccII	CGCG	1 cut(s)	117
AclWI	GGATC	2 cut(s)	527, 810
AfaI	GTAC	2 cut(s)	220, 794
AfeI	AGCGCT	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	71, 148, 667, 686, 814
AleI	CACNNNNGTG	1 cut(s)	742
AluBI	AGCT	2 cut(s)	385, 583
AluI	AGCT	2 cut(s)	385, 583
AlwI	GGATC	2 cut(s)	527, 810
Ama87I	CYCGRG	1 cut(s)	797
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	3 cut(s)	203, 542, 658
ApaI	GGGCCC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	5 cut(s)	203, 204, 305, 589, 659
AsuHPI	GGTGA	3 cut(s)	68, 452, 559
AvaI	CYCGRG	1 cut(s)	797
AvaII	GGWCC	2 cut(s)	305, 589
BaeGI	GKGCMC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	600
BccI	CCATC	6 cut(s)	147, 185, 266, 316, 419, 597
BfaI	CTAG	1 cut(s)	404
BfoI	RGCGCY	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	305, 589
BmeT110I	CYCGRG	1 cut(s)	797
BmgT120I	GGNCC	5 cut(s)	203, 204, 305, 589, 659
BmiI	GGNNCC	2 cut(s)	205, 430
BmsI	GCATC	3 cut(s)	52, 268, 573
BpiI	GAAGAC	1 cut(s)	600
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	747
BsaAI	YACGTR	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	592, 798
Bse1I	ACTGG	2 cut(s)	48, 226
Bse3DI	GCAATG	3 cut(s)	182, 288, 502
BseDI	CCNNGG	2 cut(s)	592, 798
BseGI	GGATG	4 cut(s)	133, 283, 308, 583
BseMI	GCAATG	3 cut(s)	182, 288, 502
BseNI	ACTGG	2 cut(s)	48, 226
BseSI	GKGCMC	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	205, 544, 660
BshNI	GGYRCC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	797
BslFI	GGGAC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	783
BsnI	GGCC	3 cut(s)	205, 544, 660
BsoBI	CYCGRG	1 cut(s)	797
Bsp120I	GGGCCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	532, 802
Bsp68I	TCGCGA	1 cut(s)	117
BspANI	GGCC	3 cut(s)	205, 544, 660
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	205, 430
BspPI	GGATC	2 cut(s)	527, 810
BspT107I	GGYRCC	1 cut(s)	428
BsrDI	GCAATG	3 cut(s)	182, 288, 502
BsrI	ACTGG	2 cut(s)	48, 226
BssECI	CCNNGG	2 cut(s)	592, 798
BssMI	GATC	2 cut(s)	532, 802
BssT1I	CCWWGG	1 cut(s)	592
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	2 cut(s)	438, 719
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstBAI	YACGTR	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	290, 616
BstF5I	GGATG	4 cut(s)	133, 283, 308, 583
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	535, 805
BstMBI	GATC	2 cut(s)	532, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 413, 707
BstNSI	RCATGY	1 cut(s)	694
BstSLI	GKGCMC	1 cut(s)	207
BstUI	CGCG	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	600
BsuRI	GGCC	3 cut(s)	205, 544, 660
BtsCI	GGATG	4 cut(s)	133, 283, 308, 583
BtsIMutI	CAGTG	3 cut(s)	55, 474, 528
BtuMI	TCGCGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	5 cut(s)	203, 204, 305, 589, 659
Csp6I	GTAC	2 cut(s)	219, 793
CspCI	CAANNNNNGTGG	2 cut(s)	534, 569
CviAII	CATG	1 cut(s)	691
CviQI	GTAC	2 cut(s)	219, 793
DdeI	CTNAG	2 cut(s)	290, 616
DpnI	GATC	2 cut(s)	534, 804
DpnII	GATC	2 cut(s)	532, 802
DrdI	GACNNNNNNGTC	1 cut(s)	604
DseDI	GACNNNNNNGTC	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	438, 719
EarI	CTCTTC	2 cut(s)	438, 719
Eco130I	CCWWGG	1 cut(s)	592
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	305, 589
Eco47III	AGCGCT	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	797
EcoO109I	RGGNCCY	2 cut(s)	203, 204
EcoT14I	CCWWGG	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	592
FaeI	CATG	1 cut(s)	694
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	1 cut(s)	690
FauNDI	CATATG	2 cut(s)	76, 357
FblI	GTMKAC	1 cut(s)	772
FokI	GGATG	4 cut(s)	120, 290, 295, 590
FriOI	GRGCYC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	205, 544, 660
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	694
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	126
HphI	GGTGA	3 cut(s)	68, 452, 559
Hpy166II	GTNNAC	1 cut(s)	773
Hpy188III	TCNNGA	4 cut(s)	116, 235, 367, 733
Hpy8I	GTNNAC	1 cut(s)	773
HpyAV	CCTTC	2 cut(s)	47, 692
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4IV	ACGT	2 cut(s)	44, 250
HpyCH4V	TGCA	7 cut(s)	65, 175, 281, 380, 502, 507, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 413, 707
HpyF3I	CTNAG	2 cut(s)	290, 616
HpySE526I	ACGT	2 cut(s)	44, 250
Hsp92II	CATG	1 cut(s)	694
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	532, 802
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	8 cut(s)	61, 138, 207, 220, 363, 474, 597, 727
LweI	GCATC	3 cut(s)	52, 268, 573
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	2 cut(s)	44, 250
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	534, 804
MboI	GATC	2 cut(s)	532, 802
MboII	GAAGA	6 cut(s)	281, 434, 455, 488, 600, 706
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	26, 66, 548, 572, 705
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	9 cut(s)	105, 194, 231, 341, 418, 439, 657, 771, 793
MslI	CAYNNNNRTG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	783
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	202, 413, 707
NdeI	CATATG	2 cut(s)	76, 357
NdeII	GATC	2 cut(s)	532, 802
NlaIII	CATG	1 cut(s)	694
NlaIV	GGNNCC	2 cut(s)	205, 430
NruI	TCGCGA	1 cut(s)	117
NspI	RCATGY	1 cut(s)	694
OliI	CACNNNNGTG	1 cut(s)	742
PctI	GAATGC	1 cut(s)	783
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Ppu21I	YACGTR	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	205, 430
PspOMI	GGGCCC	1 cut(s)	203
PspPI	GGNCC	5 cut(s)	203, 204, 305, 589, 659
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	2 cut(s)	220, 794
RsaNI	GTAC	2 cut(s)	219, 793
RseI	CAYNNNNRTG	1 cut(s)	742
Sau3AI	GATC	2 cut(s)	532, 802
Sau96I	GGNCC	5 cut(s)	203, 204, 305, 589, 659
SchI	GAGTC	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	8 cut(s)	47, 58, 187, 253, 387, 450, 514, 585
SfaNI	GCATC	3 cut(s)	52, 268, 573
SinI	GGWCC	2 cut(s)	305, 589
SmiMI	CAYNNNNRTG	1 cut(s)	742
SmlI	CTYRAG	1 cut(s)	762
SmoI	CTYRAG	1 cut(s)	762
Sse9I	AATT	5 cut(s)	26, 66, 548, 572, 705
SspMI	CTAG	1 cut(s)	404
StyI	CCWWGG	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	464
TaiI	ACGT	2 cut(s)	47, 253
TaqI	TCGA	1 cut(s)	366
TasI	AATT	5 cut(s)	26, 66, 548, 572, 705
TscAI	CASTG	3 cut(s)	55, 474, 528
TspDTI	ATGAA	6 cut(s)	93, 299, 352, 405, 435, 485
TspRI	CASTG	3 cut(s)	55, 474, 528
VpaK11BI	GGWCC	2 cut(s)	305, 589
XceI	RCATGY	1 cut(s)	694
XmiI	GTMKAC	1 cut(s)	772
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.