Rmu_sc0009005.1_g000004

Belongs to the glycosyltransferase 2 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009005.1
Physical Location & Seq
Reverse (-)
7629 .. 11289
3661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009005.1_g000004.1.cds

Sequence Viewer

Length: 1668 bp
atgagagaggcttggacgtttgcaaagaggtggattccattttgtaaaaggcataagatcaagtgcaggtctccagaagcctatttctcagcagcagaggatgagaatgaagatggtgctttgggggttactgatttcatacaagagaggcaaattattcaggaaaaatatgaggtgtttaaggaaagagtgagagaatatgcaaggcatggtgacactgggagcagtaagcgtcgagatcattctgcagtgattgagcttgatatgaacgcaaaacacaatttgcagcttcgggtatccggtgtgatcagtaattctcccttcatattagggcttgattgtgacatgtattgcaatgatccaagttcagctcggcaagcaatgtgtttccaccttgatcccaagctctcacctacactagcacttgtgcaattccctcataaattccacaacatcagtaagaatgacatctacgacagtcagatgagagaggtgttttcggtgctatatcaaggttttgatggacttcaagggccatgcttatccggtactggctattacatcaagaggttatccttgtatggaaaatccctaaaggaagatcataaggatcttatggaacttagacaatctgttggtccttcgaatgagttcgtaaaatccctgcttggaaactacaatcctaatatggaaatggcacagctagctgatgagacccaacagctagcctcttgtacctatgaagatggcaccaaatggggtaaagaggctggtttcttatacgcgtctgtagtggaagattatttcaccgggttcgctagcttgcattgcaagggttggaattcagtgtattgcaatccaccgaggcctcagttcttgggcagtggcaccactaatttgaatgactttttggtccaagggacaagatggagttctgggttggttgatgttgccatctccaaatactgccctcttatatatggcctttctaaaatgtctttccctgaaagtatgtgctatgcatggatagcaattttccctatttgccggttcttctcaatctggtgccttgcaactatacctcagctttgcctagtcaacggcatttccctgtaccctgaggtctcaaattcctttttttggatattttcttttgtattcctcttgtctgttttgagacaattatacgaggtcctcacaacggaagcgtcattacaacattggatatacgagcaaagaatatggatgatgaaagccgttacatctcacttatatggtagtcttgatgcttttatgaagaaatttggtttgagggaagcaagtttcttcctaacaaataaagttgatgacgttgagcaactcaagcgttacaacgcgggggtatttgatttccaaacctcaccacattttcttgttccattggcttcactggttatcttgaacatggcctccctttgtgtgggcattgccagagtgatctttctgggggaattagagaagttgtttatacaagtcttcataccattttatgcggtggtcgtcaattaccctataatagaaggaatgctaataaggaaagacagtggtcgcattccaccatcagtcaccctattgtctgctacagcttcaatcattttctgcgttttgggttcacttattgtcatgtag

Protein Analysis

555

Amino Acids

63.17

Weight (kDa)

6.64

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 911
Acc36I ACCTGC 1 cut(s) 57
AccB1I GGYRCC 3 cut(s) 749, 887, 1065
AccII CGCG 2 cut(s) 785, 1376
AciI CCGC 2 cut(s) 1376, 1532
AclWI GGATC 3 cut(s) 353, 392, 618
AcsI RAATTY 4 cut(s) 443, 841, 1129, 1301
AfaI GTAC 3 cut(s) 550, 736, 1115
AfiI CCNNNNNNNGG 3 cut(s) 1140, 1201, 1459
AflIII ACRYGT 2 cut(s) 345, 783
AgsI TTSAA 4 cut(s) 530, 901, 1441, 1629
AjuI GAANNNNNNNTTGG 2 cut(s) 893, 925
AloI GAACNNNNNNTCC 2 cut(s) 1433, 1465
Alw26I GTCTC 4 cut(s) 75, 707, 1129, 1171
AlwI GGATC 3 cut(s) 353, 392, 618
AoxI GGCC 4 cut(s) 533, 866, 982, 1446
ApeKI GCWGC 2 cut(s) 92, 286
ApoI RAATTY 4 cut(s) 443, 841, 1129, 1301
Asp700I GAANNNNTTC 1 cut(s) 650
AspS9I GGNCC 4 cut(s) 533, 638, 913, 1192
AsuC2I CCSGG 1 cut(s) 811
AsuHPI GGTGA 5 cut(s) 224, 402, 799, 1392, 1597
AsuII TTCGAA 1 cut(s) 644
AsuNHI GCTAGC 3 cut(s) 703, 724, 818
AvaII GGWCC 3 cut(s) 638, 913, 1192
AxyI CCTNAGG 1 cut(s) 1119
BanI GGYRCC 3 cut(s) 749, 887, 1065
BarI GAAGNNNNNNTAC 2 cut(s) 1197, 1229
BbsI GAAGAC 1 cut(s) 1507
BbvCI CCTCAGC 1 cut(s) 1083
BbvI GCAGC 2 cut(s) 104, 298
BccI CCATC 6 cut(s) 107, 515, 740, 921, 962, 1606
BceAI ACGGC 2 cut(s) 1117, 1241
BciVI GTATCC 1 cut(s) 307
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 1 cut(s) 811
BcoDI GTCTC 4 cut(s) 75, 707, 1129, 1171
BfaI CTAG 5 cut(s) 419, 704, 725, 819, 1094
BfmI CTRYAG 3 cut(s) 246, 789, 1620
BfuAI ACCTGC 1 cut(s) 57
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 2 cut(s) 93, 287
BlsI GCNGC 2 cut(s) 94, 288
Bme1390I CCNGG 1 cut(s) 811
Bme18I GGWCC 3 cut(s) 638, 913, 1192
BmgT120I GGNCC 4 cut(s) 533, 638, 913, 1192
BmiI GGNNCC 3 cut(s) 751, 889, 1067
BmrFI CCNGG 1 cut(s) 811
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 1276
BmtI GCTAGC 3 cut(s) 707, 728, 822
BmuI ACTGGG 1 cut(s) 228
BoxI GACNNNNGTC 1 cut(s) 1584
BpiI GAAGAC 1 cut(s) 1507
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 1083
Bpu14I TTCGAA 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 1346
BpuMI CCSGG 1 cut(s) 811
BsaI GGTCTC 3 cut(s) 75, 707, 1129
BsaJI CCNNGG 2 cut(s) 863, 916
BsaWI WCCGGW 2 cut(s) 299, 545
BsaXI ACNNNNNCTCC 2 cut(s) 1433, 1463
Bsc4I CCNNNNNNNGG 3 cut(s) 1140, 1201, 1459
Bse118I RCCGGY 1 cut(s) 1047
Bse1I ACTGG 3 cut(s) 223, 556, 1434
Bse21I CCTNAGG 1 cut(s) 1119
Bse3DI GCAATG 4 cut(s) 361, 387, 826, 1464
BseDI CCNNGG 2 cut(s) 863, 916
BseGI GGATG 2 cut(s) 106, 1251
BseLI CCNNNNNNNGG 3 cut(s) 1140, 1201, 1459
BseMI GCAATG 4 cut(s) 361, 387, 826, 1464
BseMII CTCAG 4 cut(s) 102, 884, 1097, 1110
BseNI ACTGG 3 cut(s) 223, 556, 1434
BseXI GCAGC 2 cut(s) 104, 298
BsgI GTGCAG 1 cut(s) 85
Bsh1236I CGCG 2 cut(s) 785, 1376
BshFI GGCC 4 cut(s) 535, 868, 984, 1448
BshNI GGYRCC 3 cut(s) 749, 887, 1065
BsiSI CCGG 4 cut(s) 300, 546, 810, 1048
BslFI GGGAC 1 cut(s) 934
BslI CCNNNNNNNGG 3 cut(s) 1140, 1201, 1459
BsmAI GTCTC 4 cut(s) 75, 707, 1129, 1171
BsmFI GGGAC 1 cut(s) 934
BsmI GAATGC 2 cut(s) 1569, 1590
BsnI GGCC 4 cut(s) 535, 868, 984, 1448
Bso31I GGTCTC 3 cut(s) 75, 707, 1129
Bsp119I TTCGAA 1 cut(s) 644
Bsp143I GATC 8 cut(s) 57, 238, 306, 358, 397, 601, 610, 1476
BspACI CCGC 2 cut(s) 1376, 1532
BspANI GGCC 4 cut(s) 535, 868, 984, 1448
BspCNI CTCAG 4 cut(s) 101, 883, 1096, 1111
BspFNI CGCG 2 cut(s) 785, 1376
BspLI GGNNCC 3 cut(s) 751, 889, 1067
BspMAI CTGCAG 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 57
BspOI GCTAGC 3 cut(s) 707, 728, 822
BspPI GGATC 3 cut(s) 353, 392, 618
BspT104I TTCGAA 1 cut(s) 644
BspT107I GGYRCC 3 cut(s) 749, 887, 1065
BspTNI GGTCTC 3 cut(s) 75, 707, 1129
BsrDI GCAATG 4 cut(s) 361, 387, 826, 1464
BsrFI RCCGGY 1 cut(s) 1047
BsrI ACTGG 3 cut(s) 223, 556, 1434
BssAI RCCGGY 1 cut(s) 1047
BssECI CCNNGG 2 cut(s) 863, 916
BssMI GATC 8 cut(s) 57, 238, 306, 358, 397, 601, 610, 1476
BssT1I CCWWGG 1 cut(s) 916
Bst4CI ACNGT 2 cut(s) 479, 1583
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 5 cut(s) 378, 705, 726, 820, 824
BstDEI CTNAG 5 cut(s) 88, 623, 870, 1083, 1119
BstF5I GGATG 2 cut(s) 106, 1251
BstFNI CGCG 2 cut(s) 785, 1376
BstKTI GATC 8 cut(s) 60, 241, 309, 361, 400, 604, 613, 1479
BstMAI GTCTC 4 cut(s) 75, 707, 1129, 1171
BstMBI GATC 8 cut(s) 57, 238, 306, 358, 397, 601, 610, 1476
BstMWI GCNNNNNNNGC 5 cut(s) 377, 704, 828, 1028, 1363
BstNSI RCATGY 1 cut(s) 349
BstPAI GACNNNNGTC 1 cut(s) 1584
BstSCI CCNGG 1 cut(s) 809
BstSFI CTRYAG 3 cut(s) 246, 789, 1620
BstUI CGCG 2 cut(s) 785, 1376
BstV1I GCAGC 2 cut(s) 104, 298
BstV2I GAAGAC 1 cut(s) 1507
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
Bsu36I CCTNAGG 1 cut(s) 1119
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 4 cut(s) 535, 868, 984, 1448
BtsCI GGATG 2 cut(s) 106, 1251
BtsI GCAGTG 2 cut(s) 255, 889
BtsIMutI CAGTG 6 cut(s) 216, 255, 852, 889, 1427, 1588
BveI ACCTGC 1 cut(s) 57
Cac8I GCNNGC 5 cut(s) 378, 705, 726, 820, 824
Cfr10I RCCGGY 1 cut(s) 1047
Cfr13I GGNCC 4 cut(s) 533, 638, 913, 1192
CseI GACGC 3 cut(s) 221, 774, 1197
Csp6I GTAC 3 cut(s) 549, 735, 1114
CviAII CATG 6 cut(s) 209, 346, 537, 1023, 1444, 1663
CviQI GTAC 3 cut(s) 549, 735, 1114
DdeI CTNAG 5 cut(s) 88, 623, 870, 1083, 1119
DpnI GATC 8 cut(s) 59, 240, 308, 360, 399, 603, 612, 1478
DpnII GATC 8 cut(s) 57, 238, 306, 358, 397, 601, 610, 1476
DrdI GACNNNNNNGTC 1 cut(s) 911
DseDI GACNNNNNNGTC 1 cut(s) 911
Eco130I CCWWGG 1 cut(s) 916
Eco147I AGGCCT 1 cut(s) 868
Eco31I GGTCTC 3 cut(s) 75, 707, 1129
Eco47I GGWCC 3 cut(s) 638, 913, 1192
Eco81I CCTNAGG 1 cut(s) 1119
EcoO109I RGGNCCY 1 cut(s) 1192
EcoRI GAATTC 1 cut(s) 841
EcoT14I CCWWGG 1 cut(s) 916
EcoT22I ATGCAT 1 cut(s) 1024
ErhI CCWWGG 1 cut(s) 916
FaeI CATG 6 cut(s) 212, 349, 540, 1026, 1447, 1666
FaqI GGGAC 1 cut(s) 934
FatI CATG 6 cut(s) 208, 345, 536, 1022, 1443, 1662
FauI CCCGC 1 cut(s) 1369
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 93, 287
FokI GGATG 2 cut(s) 113, 1258
Fsp4HI GCNGC 2 cut(s) 93, 287
FspBI CTAG 5 cut(s) 419, 704, 725, 819, 1094
GluI GCNGC 2 cut(s) 93, 287
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 4 cut(s) 535, 868, 984, 1448
HapII CCGG 4 cut(s) 300, 546, 810, 1048
HgaI GACGC 3 cut(s) 221, 774, 1197
Hin1II CATG 6 cut(s) 212, 349, 540, 1026, 1447, 1666
HincII GTYRAC 1 cut(s) 1099
HindII GTYRAC 1 cut(s) 1099
HinfI GANTC 1 cut(s) 34
HpaII CCGG 4 cut(s) 300, 546, 810, 1048
HphI GGTGA 5 cut(s) 224, 402, 799, 1392, 1597
Hpy166II GTNNAC 2 cut(s) 1099, 1652
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 6 cut(s) 74, 161, 236, 565, 1283, 1438
Hpy8I GTNNAC 2 cut(s) 1099, 1652
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 3 cut(s) 331, 651, 1553
HpyCH4III ACNGT 2 cut(s) 479, 1583
HpyCH4IV ACGT 2 cut(s) 17, 1350
HpyF10VI GCNNNNNNNGC 5 cut(s) 377, 704, 828, 1028, 1363
HpyF3I CTNAG 5 cut(s) 88, 623, 870, 1083, 1119
HpySE526I ACGT 2 cut(s) 17, 1350
Hsp92II CATG 6 cut(s) 212, 349, 540, 1026, 1447, 1666
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 8 cut(s) 57, 238, 306, 358, 397, 601, 610, 1476
LmnI GCTCC 1 cut(s) 222
Lsp1109I GCAGC 2 cut(s) 104, 298
LweI GCATC 1 cut(s) 1276
MaeI CTAG 5 cut(s) 419, 704, 725, 819, 1094
MaeII ACGT 2 cut(s) 17, 1350
MaeIII GTNAC 6 cut(s) 127, 212, 341, 1258, 1367, 1603
MalI GATC 8 cut(s) 59, 240, 308, 360, 399, 603, 612, 1478
MboI GATC 8 cut(s) 57, 238, 306, 358, 397, 601, 610, 1476
MboII GAAGA 8 cut(s) 122, 611, 755, 809, 1045, 1309, 1318, 1507
MflI RGATCY 1 cut(s) 610
MluI ACGCGT 1 cut(s) 783
MmeI TCCRAC 1 cut(s) 818
Mph1103I ATGCAT 1 cut(s) 1024
MroXI GAANNNNTTC 1 cut(s) 650
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 1272
MspI CCGG 4 cut(s) 300, 546, 810, 1048
MspR9I CCNGG 1 cut(s) 811
Mva1269I GAATGC 2 cut(s) 1569, 1590
MvnI CGCG 2 cut(s) 785, 1376
MwoI GCNNNNNNNGC 5 cut(s) 377, 704, 828, 1028, 1363
NciI CCSGG 1 cut(s) 811
NdeII GATC 8 cut(s) 57, 238, 306, 358, 397, 601, 610, 1476
NheI GCTAGC 3 cut(s) 703, 724, 818
NlaIII CATG 6 cut(s) 212, 349, 540, 1026, 1447, 1666
NlaIV GGNNCC 3 cut(s) 751, 889, 1067
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 3 cut(s) 212, 341, 1603
NsiI ATGCAT 1 cut(s) 1024
NspI RCATGY 1 cut(s) 349
NspV TTCGAA 1 cut(s) 644
PceI AGGCCT 1 cut(s) 868
PciI ACATGT 1 cut(s) 345
PctI GAATGC 2 cut(s) 1569, 1590
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 94, 288
PpuMI RGGWCCY 1 cut(s) 1192
PscI ACATGT 1 cut(s) 345
PshAI GACNNNNGTC 1 cut(s) 1584
Psp5II RGGWCCY 1 cut(s) 1192
PspN4I GGNNCC 3 cut(s) 751, 889, 1067
PspPI GGNCC 4 cut(s) 533, 638, 913, 1192
PspPPI RGGWCCY 1 cut(s) 1192
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 610
RsaI GTAC 3 cut(s) 550, 736, 1115
RsaNI GTAC 3 cut(s) 549, 735, 1114
RseI CAYNNNNRTG 1 cut(s) 1272
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 93, 287
Sau3AI GATC 8 cut(s) 57, 238, 306, 358, 397, 601, 610, 1476
Sau96I GGNCC 4 cut(s) 533, 638, 913, 1192
ScrFI CCNGG 1 cut(s) 811
SfaNI GCATC 1 cut(s) 1276
SfcI CTRYAG 3 cut(s) 246, 789, 1620
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 3 cut(s) 638, 913, 1192
SmiMI CAYNNNNRTG 1 cut(s) 1272
SmlI CTYRAG 1 cut(s) 1361
SmoI CTYRAG 1 cut(s) 1361
SseBI AGGCCT 1 cut(s) 868
SsiI CCGC 2 cut(s) 1376, 1532
SspMI CTAG 5 cut(s) 419, 704, 725, 819, 1094
StuI AGGCCT 1 cut(s) 868
StyD4I CCNGG 1 cut(s) 809
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 2 cut(s) 479, 1583
TaiI ACGT 2 cut(s) 20, 1353
TaqI TCGA 2 cut(s) 235, 644
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 6 cut(s) 223, 255, 852, 889, 1434, 1588
TseFI GTSAC 3 cut(s) 212, 341, 1603
TseI GCWGC 2 cut(s) 92, 286
Tsp45I GTSAC 3 cut(s) 212, 341, 1603
TspDTI ATGAA 8 cut(s) 123, 127, 281, 313, 756, 1265, 1310, 1507
TspGWI ACGGA 1 cut(s) 1217
TspRI CASTG 6 cut(s) 223, 255, 852, 889, 1434, 1588
VpaK11BI GGWCC 3 cut(s) 638, 913, 1192
XapI RAATTY 4 cut(s) 443, 841, 1129, 1301
XceI RCATGY 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 5 cut(s) 419, 704, 725, 819, 1094
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.