MD16G1211700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000838
Physical Location & Seq
Forward (+)
20032349 .. 20033368
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1211700.v1.1.491

Sequence Viewer

Length: 318 bp
ATGCCTCTTCTTATTTATGTTTCTCGTGAAAAAATACCTTCTCAACCTCATCATTTCAAAAGGTCGGAGCACTCAATGTTCTTGTGCTATGGAAAGGTTATGATGGGCTTGGAGGGCCATGCGTGTGTGGTACTGGCTACTACATCAAGAGGGTATCTTTATGTGGAAAGTTCCATTAGTGAAGCCGGGGATGCAATGAAACTTGACAATGTTTTGGTCCATCCAATGAGTTCATCAAATCCCTCCGCCAAATCAACAAGCCTGATCCTATATTCATGCAGAGAAATAATACACAGCCAGATGAAACCCAACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.76

Weight (kDa)

8.48

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 259
AfaI GTAC 1 cut(s) 132
AgsI TTSAA 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 1 cut(s) 259
AoxI GGCC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 115, 217
AsuC2I CCSGG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 217
BauI CACGAG 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 2 cut(s) 97, 228
BcnI CCSGG 1 cut(s) 187
BfaI CTAG 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 115, 217
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 196, 220
BseMI GCAATG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 138
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 186
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 264
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 12
BstF5I GGATG 2 cut(s) 196, 220
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 114, 191
BstSCI CCNGG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 196, 220
Cfr13I GGNCC 2 cut(s) 115, 217
Csp6I GTAC 1 cut(s) 131
CviAII CATG 2 cut(s) 119, 276
CviJI RGCY 6 cut(s) 108, 117, 137, 185, 261, 297
CviKI_1 RGCY 6 cut(s) 108, 117, 137, 185, 261, 297
CviQI GTAC 1 cut(s) 131
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 217
FaeI CATG 2 cut(s) 122, 279
FaiI YATR 7 cut(s) 18, 90, 101, 120, 162, 271, 277
FatI CATG 2 cut(s) 118, 275
FokI GGATG 2 cut(s) 203, 207
FspBI CTAG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 117
HapII CCGG 1 cut(s) 186
Hin1II CATG 2 cut(s) 122, 279
HpaII CCGG 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 26, 147
HpyAV CCTTC 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 194, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 191
Hsp92II CATG 2 cut(s) 122, 279
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 119, 199, 275, 311
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 316
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 15, 57, 106, 143, 253
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 114, 191
NciI CCSGG 1 cut(s) 187
NdeII GATC 1 cut(s) 264
NlaIII CATG 2 cut(s) 122, 279
PspPI GGNCC 2 cut(s) 115, 217
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 123
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 2 cut(s) 115, 217
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 72
SetI ASST 4 cut(s) 40, 49, 65, 99
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 123
SsiI CCGC 1 cut(s) 246
SspMI CTAG 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 185
TspDTI ATGAA 4 cut(s) 212, 222, 264, 317
VpaK11BI GGWCC 1 cut(s) 217
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.